JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ftxa1.name2015-04-17 17:29 0 Job name flag file
[ ]jp_1b_RWR1.align2015-04-17 18:45 12KPSIBLAST alignment in FASTA format
[TXT]jp_1b_RWR1.als2015-04-17 18:45 2.2KAlscript command file for PS/PDF output
[ ]jp_1b_RWR1.blast.gz2015-04-17 18:45 20KCompressed PSIBLAST output file
[TXT]jp_1b_RWR1.coils.csv2015-04-17 18:45 564 COILS output in CSV format
[ ]jp_1b_RWR1.coilseq.lupas_142015-04-17 18:45 3.7KCOILS output, window length 14
[ ]jp_1b_RWR1.coilseq.lupas_212015-04-17 18:45 3.7KCOILS output, window length 21
[ ]jp_1b_RWR1.coilseq.lupas_282015-04-17 18:45 3.7KCOILS output, window length 28
[ ]jp_1b_RWR1.concise2015-04-17 18:45 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_1b_RWR1.concise.blc2015-04-17 18:45 13KBLC format prediction and alignment data
[ ]jp_1b_RWR1.concise.fasta2015-04-17 18:45 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_1b_RWR1.concise.pdf2015-04-17 18:45 89KPDF prediction and alignment data
[ ]jp_1b_RWR1.concise.ps2015-04-17 18:45 1.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_1b_RWR1.fasta2015-04-17 18:43 103 Input query sequence in FASTA format
[ ]jp_1b_RWR1.full_MSA.fasta2015-04-17 18:45 41KFull MSA before JPred filters in FASTA
[TXT]jp_1b_RWR1.full_MSA.fasta.noGaps.html2015-04-17 18:45 38KFull MSA before JPred filters in FASTA
[TXT]jp_1b_RWR1.full_MSA.fasta.withGaps.html2015-04-17 18:45 194KFull MSA before JPred filters in FASTA
[ ]jp_1b_RWR1.hmm2015-04-17 18:45 17KHHMer2 profile of the alignment
[TXT]jp_1b_RWR1.html2015-04-17 18:45 44KHTML prediction and alignment data
[ ]jp_1b_RWR1.input2015-04-17 17:29 96 Raw input data for analysis
[ ]jp_1b_RWR1.jalview2015-04-17 18:45 2.6KJalview annotation file for alignment
[ ]jp_1b_RWR1.jnet2015-04-17 18:45 3.3KJnet secondary structure output
[TXT]jp_1b_RWR1.profile2015-04-17 18:45 15KPSIBLAST profile from alignment
[ ]jp_1b_RWR1.pssm2015-04-17 18:45 19KPSIBLAST PSSM for Jnet
[TXT]jp_1b_RWR1.results.html2016-02-15 12:19 46KJPred results page
[TXT]jp_1b_RWR1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1b_RWR1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1b_RWR1.seq2015-04-17 17:29 103 Sequence data file
[TXT]jp_1b_RWR1.simple.html2015-04-17 18:45 1.2KBrief HTML: sequence and prediction only
[TXT]jp_1b_RWR1.svg.html2015-04-17 18:46 38KJalview SVG summary of results
[ ]jp_1b_RWR1.tar.gz2015-04-17 18:46 187KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.