JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fzta1.name2015-04-17 17:30 0 Job name flag file
[ ]jp_WtbAhYa.align2015-04-17 18:47 475 PSIBLAST alignment in FASTA format
[TXT]jp_WtbAhYa.als2015-04-17 18:47 1.6KAlscript command file for PS/PDF output
[ ]jp_WtbAhYa.blast.gz2015-04-17 18:47 1.9KCompressed PSIBLAST output file
[TXT]jp_WtbAhYa.coils.csv2015-04-17 18:47 498 COILS output in CSV format
[ ]jp_WtbAhYa.coilseq.lupas_142015-04-17 18:47 3.3KCOILS output, window length 14
[ ]jp_WtbAhYa.coilseq.lupas_212015-04-17 18:47 3.3KCOILS output, window length 21
[ ]jp_WtbAhYa.coilseq.lupas_282015-04-17 18:47 3.3KCOILS output, window length 28
[ ]jp_WtbAhYa.concise2015-04-17 18:47 4.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_WtbAhYa.concise.blc2015-04-17 18:47 1.7KBLC format prediction and alignment data
[ ]jp_WtbAhYa.concise.fasta2015-04-17 18:47 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_WtbAhYa.concise.pdf2015-04-17 18:47 13KPDF prediction and alignment data
[ ]jp_WtbAhYa.concise.ps2015-04-17 18:47 203KPrediction: coiled-coil, solvent, alignment
[ ]jp_WtbAhYa.fasta2015-04-17 18:43 92 Input query sequence in FASTA format
[ ]jp_WtbAhYa.full_MSA.fasta2015-04-17 18:47 578 Full MSA before JPred filters in FASTA
[TXT]jp_WtbAhYa.full_MSA.fasta.noGaps.html2015-04-17 18:47 1.3KFull MSA before JPred filters in FASTA
[TXT]jp_WtbAhYa.full_MSA.fasta.withGaps.html2015-04-17 18:47 1.4KFull MSA before JPred filters in FASTA
[ ]jp_WtbAhYa.hmm2015-04-17 18:47 15KHHMer2 profile of the alignment
[TXT]jp_WtbAhYa.html2015-04-17 18:47 12KHTML prediction and alignment data
[ ]jp_WtbAhYa.input2015-04-17 17:30 85 Raw input data for analysis
[ ]jp_WtbAhYa.jalview2015-04-17 18:47 2.5KJalview annotation file for alignment
[ ]jp_WtbAhYa.jnet2015-04-17 18:47 2.9KJnet secondary structure output
[TXT]jp_WtbAhYa.profile2015-04-17 18:45 13KPSIBLAST profile from alignment
[ ]jp_WtbAhYa.pssm2015-04-17 18:47 17KPSIBLAST PSSM for Jnet
[TXT]jp_WtbAhYa.results.html2016-02-15 12:19 40KJPred results page
[TXT]jp_WtbAhYa.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_WtbAhYa.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_WtbAhYa.seq2015-04-17 17:30 92 Sequence data file
[TXT]jp_WtbAhYa.simple.html2015-04-17 18:47 1.1KBrief HTML: sequence and prediction only
[TXT]jp_WtbAhYa.svg.html2015-04-17 18:48 32KJalview SVG summary of results
[ ]jp_WtbAhYa.tar.gz2015-04-17 18:48 34KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.