JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2gsva1.name2015-04-17 16:52 0 Job name flag file
[ ]jp_4cMJ5av.align2015-04-17 17:48 429 PSIBLAST alignment in FASTA format
[TXT]jp_4cMJ5av.als2015-04-17 17:48 1.6KAlscript command file for PS/PDF output
[ ]jp_4cMJ5av.blast.gz2015-04-17 17:48 2.4KCompressed PSIBLAST output file
[TXT]jp_4cMJ5av.coils.csv2015-04-17 17:48 432 COILS output in CSV format
[ ]jp_4cMJ5av.coilseq.lupas_142015-04-17 17:48 2.8KCOILS output, window length 14
[ ]jp_4cMJ5av.coilseq.lupas_212015-04-17 17:48 2.8KCOILS output, window length 21
[ ]jp_4cMJ5av.coilseq.lupas_282015-04-17 17:48 2.8KCOILS output, window length 28
[ ]jp_4cMJ5av.concise2015-04-17 17:48 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_4cMJ5av.concise.blc2015-04-17 17:48 1.5KBLC format prediction and alignment data
[ ]jp_4cMJ5av.concise.fasta2015-04-17 17:48 1.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_4cMJ5av.concise.pdf2015-04-17 17:48 11KPDF prediction and alignment data
[ ]jp_4cMJ5av.concise.ps2015-04-17 17:48 170KPrediction: coiled-coil, solvent, alignment
[ ]jp_4cMJ5av.fasta2015-04-17 17:46 80 Input query sequence in FASTA format
[ ]jp_4cMJ5av.full_MSA.fasta2015-04-17 17:48 1.0KFull MSA before JPred filters in FASTA
[TXT]jp_4cMJ5av.full_MSA.fasta.noGaps.html2015-04-17 17:48 2.4KFull MSA before JPred filters in FASTA
[TXT]jp_4cMJ5av.full_MSA.fasta.withGaps.html2015-04-17 17:48 3.0KFull MSA before JPred filters in FASTA
[ ]jp_4cMJ5av.hmm2015-04-17 17:48 13KHHMer2 profile of the alignment
[TXT]jp_4cMJ5av.html2015-04-17 17:48 11KHTML prediction and alignment data
[ ]jp_4cMJ5av.input2015-04-17 16:52 74 Raw input data for analysis
[ ]jp_4cMJ5av.jalview2015-04-17 17:48 2.2KJalview annotation file for alignment
[ ]jp_4cMJ5av.jnet2015-04-17 17:48 2.5KJnet secondary structure output
[TXT]jp_4cMJ5av.profile2015-04-17 17:47 11KPSIBLAST profile from alignment
[ ]jp_4cMJ5av.pssm2015-04-17 17:48 14KPSIBLAST PSSM for Jnet
[TXT]jp_4cMJ5av.results.html2016-02-15 12:19 37KJPred results page
[TXT]jp_4cMJ5av.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_4cMJ5av.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_4cMJ5av.seq2015-04-17 16:52 80 Sequence data file
[TXT]jp_4cMJ5av.simple.html2015-04-17 17:48 1.0KBrief HTML: sequence and prediction only
[TXT]jp_4cMJ5av.svg.html2015-04-17 17:48 28KJalview SVG summary of results
[ ]jp_4cMJ5av.tar.gz2015-04-17 17:48 33KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.