JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i9wa2.name2015-04-17 15:39 0 Job name flag file
[ ]jp_dCcHEUP.align2015-04-17 15:56 410 PSIBLAST alignment in FASTA format
[TXT]jp_dCcHEUP.als2015-04-17 15:56 1.7KAlscript command file for PS/PDF output
[ ]jp_dCcHEUP.blast.gz2015-04-17 15:56 2.0KCompressed PSIBLAST output file
[TXT]jp_dCcHEUP.coils.csv2015-04-17 15:56 264 COILS output in CSV format
[ ]jp_dCcHEUP.coilseq.lupas_142015-04-17 15:56 1.6KCOILS output, window length 14
[ ]jp_dCcHEUP.coilseq.lupas_212015-04-17 15:56 1.6KCOILS output, window length 21
[ ]jp_dCcHEUP.coilseq.lupas_282015-04-17 15:56 1.6KCOILS output, window length 28
[ ]jp_dCcHEUP.concise2015-04-17 15:56 2.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_dCcHEUP.concise.blc2015-04-17 15:56 1.1KBLC format prediction and alignment data
[ ]jp_dCcHEUP.concise.fasta2015-04-17 15:56 910 Prediction: coiled-coil, solvent, alignment
[ ]jp_dCcHEUP.concise.pdf2015-04-17 15:56 7.9KPDF prediction and alignment data
[ ]jp_dCcHEUP.concise.ps2015-04-17 15:56 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_dCcHEUP.fasta2015-04-17 15:51 52 Input query sequence in FASTA format
[ ]jp_dCcHEUP.full_MSA.fasta2015-04-17 15:56 638 Full MSA before JPred filters in FASTA
[TXT]jp_dCcHEUP.full_MSA.fasta.noGaps.html2015-04-17 15:56 2.0KFull MSA before JPred filters in FASTA
[TXT]jp_dCcHEUP.full_MSA.fasta.withGaps.html2015-04-17 15:56 2.0KFull MSA before JPred filters in FASTA
[ ]jp_dCcHEUP.hmm2015-04-17 15:56 7.3KHHMer2 profile of the alignment
[TXT]jp_dCcHEUP.html2015-04-17 15:56 6.2KHTML prediction and alignment data
[ ]jp_dCcHEUP.input2015-04-17 15:39 46 Raw input data for analysis
[ ]jp_dCcHEUP.jalview2015-04-17 15:56 1.6KJalview annotation file for alignment
[ ]jp_dCcHEUP.jnet2015-04-17 15:56 1.5KJnet secondary structure output
[TXT]jp_dCcHEUP.profile2015-04-17 15:52 6.7KPSIBLAST profile from alignment
[ ]jp_dCcHEUP.pssm2015-04-17 15:56 8.4KPSIBLAST PSSM for Jnet
[TXT]jp_dCcHEUP.results.html2016-02-15 12:20 28KJPred results page
[TXT]jp_dCcHEUP.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_dCcHEUP.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_dCcHEUP.seq2015-04-17 15:39 52 Sequence data file
[TXT]jp_dCcHEUP.simple.html2015-04-17 15:56 1.0KBrief HTML: sequence and prediction only
[TXT]jp_dCcHEUP.svg.html2015-04-17 15:56 20KJalview SVG summary of results
[ ]jp_dCcHEUP.tar.gz2015-04-17 15:56 24KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.