JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:52 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j4wd1.name2015-04-17 18:08 0 Job name flag file
[ ]jp_Z0WRmS7.align2015-04-17 19:51 250 PSIBLAST alignment in FASTA format
[TXT]jp_Z0WRmS7.als2015-04-17 19:51 1.4KAlscript command file for PS/PDF output
[ ]jp_Z0WRmS7.blast.gz2015-04-17 19:51 2.2KCompressed PSIBLAST output file
[TXT]jp_Z0WRmS7.coils.csv2015-04-17 19:51 234 COILS output in CSV format
[ ]jp_Z0WRmS7.coilseq.lupas_142015-04-17 19:51 1.4KCOILS output, window length 14
[ ]jp_Z0WRmS7.coilseq.lupas_212015-04-17 19:51 1.4KCOILS output, window length 21
[ ]jp_Z0WRmS7.coilseq.lupas_282015-04-17 19:51 1.4KCOILS output, window length 28
[ ]jp_Z0WRmS7.concise2015-04-17 19:51 2.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z0WRmS7.concise.blc2015-04-17 19:51 852 BLC format prediction and alignment data
[ ]jp_Z0WRmS7.concise.fasta2015-04-17 19:51 700 Prediction: coiled-coil, solvent, alignment
[ ]jp_Z0WRmS7.concise.pdf2015-04-17 19:51 5.8KPDF prediction and alignment data
[ ]jp_Z0WRmS7.concise.ps2015-04-17 19:51 73KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z0WRmS7.fasta2015-04-17 19:49 47 Input query sequence in FASTA format
[ ]jp_Z0WRmS7.full_MSA.fasta2015-04-17 19:51 874 Full MSA before JPred filters in FASTA
[TXT]jp_Z0WRmS7.full_MSA.fasta.noGaps.html2015-04-17 19:51 2.9KFull MSA before JPred filters in FASTA
[TXT]jp_Z0WRmS7.full_MSA.fasta.withGaps.html2015-04-17 19:51 2.9KFull MSA before JPred filters in FASTA
[ ]jp_Z0WRmS7.hmm2015-04-17 19:51 6.4KHHMer2 profile of the alignment
[TXT]jp_Z0WRmS7.html2015-04-17 19:51 4.8KHTML prediction and alignment data
[ ]jp_Z0WRmS7.input2015-04-17 18:08 41 Raw input data for analysis
[ ]jp_Z0WRmS7.jalview2015-04-17 19:51 1.5KJalview annotation file for alignment
[ ]jp_Z0WRmS7.jnet2015-04-17 19:51 1.3KJnet secondary structure output
[TXT]jp_Z0WRmS7.profile2015-04-17 19:51 5.9KPSIBLAST profile from alignment
[ ]jp_Z0WRmS7.pssm2015-04-17 19:51 7.3KPSIBLAST PSSM for Jnet
[TXT]jp_Z0WRmS7.results.html2016-02-15 12:20 24KJPred results page
[TXT]jp_Z0WRmS7.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Z0WRmS7.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Z0WRmS7.seq2015-04-17 18:08 47 Sequence data file
[TXT]jp_Z0WRmS7.simple.html2015-04-17 19:51 1.0KBrief HTML: sequence and prediction only
[TXT]jp_Z0WRmS7.svg.html2015-04-17 19:52 16KJalview SVG summary of results
[ ]jp_Z0WRmS7.tar.gz2015-04-17 19:52 21KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.