JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:59 4.8KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j5ya_.name2015-04-17 15:41 0 Job name flag file
[ ]jp_SAT39y0.align2015-04-17 15:59 2.9KPSIBLAST alignment in FASTA format
[TXT]jp_SAT39y0.als2015-04-17 15:59 1.6KAlscript command file for PS/PDF output
[ ]jp_SAT39y0.blast.gz2015-04-17 15:59 4.9KCompressed PSIBLAST output file
[TXT]jp_SAT39y0.coils.csv2015-04-17 15:59 396 COILS output in CSV format
[ ]jp_SAT39y0.coilseq.lupas_142015-04-17 15:59 2.6KCOILS output, window length 14
[ ]jp_SAT39y0.coilseq.lupas_212015-04-17 15:59 2.6KCOILS output, window length 21
[ ]jp_SAT39y0.coilseq.lupas_282015-04-17 15:59 2.6KCOILS output, window length 28
[ ]jp_SAT39y0.concise2015-04-17 15:59 8.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_SAT39y0.concise.blc2015-04-17 15:59 3.8KBLC format prediction and alignment data
[ ]jp_SAT39y0.concise.fasta2015-04-17 15:59 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_SAT39y0.concise.pdf2015-04-17 15:59 2.2KPDF prediction and alignment data
[ ]jp_SAT39y0.concise.ps2015-04-17 15:59 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_SAT39y0.fasta2015-04-17 15:52 74 Input query sequence in FASTA format
[ ]jp_SAT39y0.full_MSA.fasta2015-04-17 15:59 6.4KFull MSA before JPred filters in FASTA
[TXT]jp_SAT39y0.full_MSA.fasta.noGaps.html2015-04-17 15:59 16KFull MSA before JPred filters in FASTA
[TXT]jp_SAT39y0.full_MSA.fasta.withGaps.html2015-04-17 15:59 16KFull MSA before JPred filters in FASTA
[ ]jp_SAT39y0.hmm2015-04-17 15:59 11KHHMer2 profile of the alignment
[TXT]jp_SAT39y0.html2015-04-17 15:59 18KHTML prediction and alignment data
[ ]jp_SAT39y0.input2015-04-17 15:41 68 Raw input data for analysis
[ ]jp_SAT39y0.jalview2015-04-17 15:59 2.1KJalview annotation file for alignment
[ ]jp_SAT39y0.jnet2015-04-17 15:59 2.3KJnet secondary structure output
[TXT]jp_SAT39y0.profile2015-04-17 15:57 10KPSIBLAST profile from alignment
[ ]jp_SAT39y0.pssm2015-04-17 15:59 13KPSIBLAST PSSM for Jnet
[TXT]jp_SAT39y0.results.html2016-02-15 12:20 35KJPred results page
[TXT]jp_SAT39y0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_SAT39y0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_SAT39y0.seq2015-04-17 15:41 74 Sequence data file
[TXT]jp_SAT39y0.simple.html2015-04-17 15:59 1.0KBrief HTML: sequence and prediction only
[TXT]jp_SAT39y0.svg.html2015-04-17 15:59 26KJalview SVG summary of results
[ ]jp_SAT39y0.tar.gz2015-04-17 15:59 34KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.