JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:33 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j8ka1.name2015-04-17 17:32 0 Job name flag file
[ ]jp_iRQHIVi.align2015-04-17 19:26 93KPSIBLAST alignment in FASTA format
[TXT]jp_iRQHIVi.als2015-04-17 19:26 1.6KAlscript command file for PS/PDF output
[ ]jp_iRQHIVi.blast.gz2015-04-17 19:07 71MCompressed PSIBLAST output file
[TXT]jp_iRQHIVi.coils.csv2015-04-17 19:26 1.1KCOILS output in CSV format
[ ]jp_iRQHIVi.coilseq.lupas_142015-04-17 19:26 7.3KCOILS output, window length 14
[ ]jp_iRQHIVi.coilseq.lupas_212015-04-17 19:26 7.3KCOILS output, window length 21
[ ]jp_iRQHIVi.coilseq.lupas_282015-04-17 19:26 7.3KCOILS output, window length 28
[ ]jp_iRQHIVi.concise2015-04-17 19:26 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_iRQHIVi.concise.blc2015-04-17 19:26 95KBLC format prediction and alignment data
[ ]jp_iRQHIVi.concise.fasta2015-04-17 19:26 95KPrediction: coiled-coil, solvent, alignment
[ ]jp_iRQHIVi.concise.pdf2015-04-17 19:26 611KPDF prediction and alignment data
[ ]jp_iRQHIVi.concise.ps2015-04-17 19:26 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_iRQHIVi.fasta2015-04-17 18:46 190 Input query sequence in FASTA format
[ ]jp_iRQHIVi.full_MSA.fasta2015-04-17 19:19 212MFull MSA before JPred filters in FASTA
[TXT]jp_iRQHIVi.full_MSA.fasta.noGaps.html2015-04-17 19:33 11MFull MSA before JPred filters in FASTA
[TXT]jp_iRQHIVi.full_MSA.fasta.withGaps.html2015-04-17 19:33 368MFull MSA before JPred filters in FASTA
[ ]jp_iRQHIVi.hmm2015-04-17 19:26 33KHHMer2 profile of the alignment
[TXT]jp_iRQHIVi.html2015-04-17 19:26 196KHTML prediction and alignment data
[ ]jp_iRQHIVi.input2015-04-17 17:32 182 Raw input data for analysis
[ ]jp_iRQHIVi.jalview2015-04-17 19:26 4.1KJalview annotation file for alignment
[ ]jp_iRQHIVi.jnet2015-04-17 19:26 6.4KJnet secondary structure output
[TXT]jp_iRQHIVi.profile2015-04-17 19:03 28KPSIBLAST profile from alignment
[ ]jp_iRQHIVi.pssm2015-04-17 19:26 38KPSIBLAST PSSM for Jnet
[TXT]jp_iRQHIVi.results.html2016-02-15 12:20 73KJPred results page
[TXT]jp_iRQHIVi.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_iRQHIVi.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_iRQHIVi.seq2015-04-17 17:32 190 Sequence data file
[TXT]jp_iRQHIVi.simple.html2015-04-17 19:26 1.3KBrief HTML: sequence and prediction only
[TXT]jp_iRQHIVi.svg.html2015-04-17 19:33 65KJalview SVG summary of results
[ ]jp_iRQHIVi.tar.gz2015-04-17 19:33 95MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.