JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2je6a2.name2015-04-17 19:22 0 Job name flag file
[ ]jp_n4Cubcv.align2015-04-17 21:57 81KPSIBLAST alignment in FASTA format
[TXT]jp_n4Cubcv.als2015-04-17 21:57 2.1KAlscript command file for PS/PDF output
[ ]jp_n4Cubcv.blast.gz2015-04-17 21:57 871KCompressed PSIBLAST output file
[TXT]jp_n4Cubcv.coils.csv2015-04-17 21:57 534 COILS output in CSV format
[ ]jp_n4Cubcv.coilseq.lupas_142015-04-17 21:57 3.5KCOILS output, window length 14
[ ]jp_n4Cubcv.coilseq.lupas_212015-04-17 21:57 3.5KCOILS output, window length 21
[ ]jp_n4Cubcv.coilseq.lupas_282015-04-17 21:57 3.5KCOILS output, window length 28
[ ]jp_n4Cubcv.concise2015-04-17 21:57 156KPrediction: coiled-coil, solvent, alignment
[ ]jp_n4Cubcv.concise.blc2015-04-17 21:57 81KBLC format prediction and alignment data
[ ]jp_n4Cubcv.concise.fasta2015-04-17 21:57 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_n4Cubcv.concise.pdf2015-04-17 21:58 542KPDF prediction and alignment data
[ ]jp_n4Cubcv.concise.ps2015-04-17 21:57 9.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_n4Cubcv.fasta2015-04-17 21:52 98 Input query sequence in FASTA format
[ ]jp_n4Cubcv.full_MSA.fasta2015-04-17 21:57 3.3MFull MSA before JPred filters in FASTA
[TXT]jp_n4Cubcv.full_MSA.fasta.noGaps.html2015-04-17 21:58 910KFull MSA before JPred filters in FASTA
[TXT]jp_n4Cubcv.full_MSA.fasta.withGaps.html2015-04-17 21:58 11MFull MSA before JPred filters in FASTA
[ ]jp_n4Cubcv.hmm2015-04-17 21:57 16KHHMer2 profile of the alignment
[TXT]jp_n4Cubcv.html2015-04-17 21:57 245KHTML prediction and alignment data
[ ]jp_n4Cubcv.input2015-04-17 19:22 91 Raw input data for analysis
[ ]jp_n4Cubcv.jalview2015-04-17 21:57 2.5KJalview annotation file for alignment
[ ]jp_n4Cubcv.jnet2015-04-17 21:57 3.1KJnet secondary structure output
[TXT]jp_n4Cubcv.profile2015-04-17 21:56 14KPSIBLAST profile from alignment
[ ]jp_n4Cubcv.pssm2015-04-17 21:57 18KPSIBLAST PSSM for Jnet
[TXT]jp_n4Cubcv.results.html2016-02-15 12:20 44KJPred results page
[TXT]jp_n4Cubcv.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_n4Cubcv.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_n4Cubcv.seq2015-04-17 19:22 98 Sequence data file
[TXT]jp_n4Cubcv.simple.html2015-04-17 21:57 1.2KBrief HTML: sequence and prediction only
[TXT]jp_n4Cubcv.svg.html2015-04-17 21:58 36KJalview SVG summary of results
[ ]jp_n4Cubcv.tar.gz2015-04-17 21:58 2.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.