JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:52 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2liga_.name2015-04-17 18:45 0 Job name flag file
[ ]jp_vM9Pst5.align2015-04-17 20:51 40KPSIBLAST alignment in FASTA format
[TXT]jp_vM9Pst5.als2015-04-17 20:52 2.2KAlscript command file for PS/PDF output
[ ]jp_vM9Pst5.blast.gz2015-04-17 20:51 114KCompressed PSIBLAST output file
[TXT]jp_vM9Pst5.coils.csv2015-04-17 20:51 1.0KCOILS output in CSV format
[ ]jp_vM9Pst5.coilseq.lupas_142015-04-17 20:51 6.6KCOILS output, window length 14
[ ]jp_vM9Pst5.coilseq.lupas_212015-04-17 20:51 6.6KCOILS output, window length 21
[ ]jp_vM9Pst5.coilseq.lupas_282015-04-17 20:51 6.6KCOILS output, window length 28
[ ]jp_vM9Pst5.concise2015-04-17 20:51 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_vM9Pst5.concise.blc2015-04-17 20:51 41KBLC format prediction and alignment data
[ ]jp_vM9Pst5.concise.fasta2015-04-17 20:51 41KPrediction: coiled-coil, solvent, alignment
[ ]jp_vM9Pst5.concise.pdf2015-04-17 20:52 262KPDF prediction and alignment data
[ ]jp_vM9Pst5.concise.ps2015-04-17 20:52 4.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_vM9Pst5.fasta2015-04-17 20:49 173 Input query sequence in FASTA format
[ ]jp_vM9Pst5.full_MSA.fasta2015-04-17 20:51 119KFull MSA before JPred filters in FASTA
[TXT]jp_vM9Pst5.full_MSA.fasta.noGaps.html2015-04-17 20:52 113KFull MSA before JPred filters in FASTA
[TXT]jp_vM9Pst5.full_MSA.fasta.withGaps.html2015-04-17 20:52 722KFull MSA before JPred filters in FASTA
[ ]jp_vM9Pst5.hmm2015-04-17 20:51 30KHHMer2 profile of the alignment
[TXT]jp_vM9Pst5.html2015-04-17 20:51 102KHTML prediction and alignment data
[ ]jp_vM9Pst5.input2015-04-17 18:45 165 Raw input data for analysis
[ ]jp_vM9Pst5.jalview2015-04-17 20:51 4.1KJalview annotation file for alignment
[ ]jp_vM9Pst5.jnet2015-04-17 20:51 5.8KJnet secondary structure output
[TXT]jp_vM9Pst5.profile2015-04-17 20:51 26KPSIBLAST profile from alignment
[ ]jp_vM9Pst5.pssm2015-04-17 20:51 34KPSIBLAST PSSM for Jnet
[TXT]jp_vM9Pst5.results.html2016-02-15 12:20 71KJPred results page
[TXT]jp_vM9Pst5.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vM9Pst5.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vM9Pst5.seq2015-04-17 18:45 173 Sequence data file
[TXT]jp_vM9Pst5.simple.html2015-04-17 20:51 1.3KBrief HTML: sequence and prediction only
[TXT]jp_vM9Pst5.svg.html2015-04-17 20:52 63KJalview SVG summary of results
[ ]jp_vM9Pst5.tar.gz2015-04-17 20:52 551KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.