JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:40 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2nlsa_.name2015-04-17 19:22 0 Job name flag file
[ ]jp_ZHZU45D.align2015-04-17 22:40 924 PSIBLAST alignment in FASTA format
[TXT]jp_ZHZU45D.als2015-04-17 22:40 1.6KAlscript command file for PS/PDF output
[ ]jp_ZHZU45D.blast.gz2015-04-17 22:40 3.6KCompressed PSIBLAST output file
[TXT]jp_ZHZU45D.coils.csv2015-04-17 22:40 246 COILS output in CSV format
[ ]jp_ZHZU45D.coilseq.lupas_142015-04-17 22:40 1.5KCOILS output, window length 14
[ ]jp_ZHZU45D.coilseq.lupas_212015-04-17 22:40 1.5KCOILS output, window length 21
[ ]jp_ZHZU45D.coilseq.lupas_282015-04-17 22:40 1.5KCOILS output, window length 28
[ ]jp_ZHZU45D.concise2015-04-17 22:40 3.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZHZU45D.concise.blc2015-04-17 22:40 1.5KBLC format prediction and alignment data
[ ]jp_ZHZU45D.concise.fasta2015-04-17 22:40 1.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZHZU45D.concise.pdf2015-04-17 22:40 8.5KPDF prediction and alignment data
[ ]jp_ZHZU45D.concise.ps2015-04-17 22:40 131KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZHZU45D.fasta2015-04-17 21:52 49 Input query sequence in FASTA format
[ ]jp_ZHZU45D.full_MSA.fasta2015-04-17 22:40 2.1KFull MSA before JPred filters in FASTA
[TXT]jp_ZHZU45D.full_MSA.fasta.noGaps.html2015-04-17 22:40 6.5KFull MSA before JPred filters in FASTA
[TXT]jp_ZHZU45D.full_MSA.fasta.withGaps.html2015-04-17 22:40 6.5KFull MSA before JPred filters in FASTA
[ ]jp_ZHZU45D.hmm2015-04-17 22:40 6.8KHHMer2 profile of the alignment
[TXT]jp_ZHZU45D.html2015-04-17 22:40 8.5KHTML prediction and alignment data
[ ]jp_ZHZU45D.input2015-04-17 19:22 43 Raw input data for analysis
[ ]jp_ZHZU45D.jalview2015-04-17 22:40 1.5KJalview annotation file for alignment
[ ]jp_ZHZU45D.jnet2015-04-17 22:40 1.4KJnet secondary structure output
[TXT]jp_ZHZU45D.profile2015-04-17 22:31 6.2KPSIBLAST profile from alignment
[ ]jp_ZHZU45D.pssm2015-04-17 22:40 7.7KPSIBLAST PSSM for Jnet
[TXT]jp_ZHZU45D.results.html2016-02-15 12:20 25KJPred results page
[TXT]jp_ZHZU45D.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ZHZU45D.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ZHZU45D.seq2015-04-17 19:22 49 Sequence data file
[TXT]jp_ZHZU45D.simple.html2015-04-17 22:40 1.0KBrief HTML: sequence and prediction only
[TXT]jp_ZHZU45D.svg.html2015-04-17 22:40 17KJalview SVG summary of results
[ ]jp_ZHZU45D.tar.gz2015-04-17 22:40 27KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.