JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ntka_.name2015-04-17 19:23 0 Job name flag file
[ ]jp__DuosYr.align2015-04-17 21:58 41KPSIBLAST alignment in FASTA format
[TXT]jp__DuosYr.als2015-04-17 21:58 3.6KAlscript command file for PS/PDF output
[ ]jp__DuosYr.blast.gz2015-04-17 21:58 120KCompressed PSIBLAST output file
[TXT]jp__DuosYr.coils.csv2015-04-17 21:58 1.2KCOILS output in CSV format
[ ]jp__DuosYr.coilseq.lupas_142015-04-17 21:58 8.7KCOILS output, window length 14
[ ]jp__DuosYr.coilseq.lupas_212015-04-17 21:58 8.7KCOILS output, window length 21
[ ]jp__DuosYr.coilseq.lupas_282015-04-17 21:58 8.7KCOILS output, window length 28
[ ]jp__DuosYr.concise2015-04-17 21:58 89KPrediction: coiled-coil, solvent, alignment
[ ]jp__DuosYr.concise.blc2015-04-17 21:58 44KBLC format prediction and alignment data
[ ]jp__DuosYr.concise.fasta2015-04-17 21:58 44KPrediction: coiled-coil, solvent, alignment
[ ]jp__DuosYr.concise.pdf2015-04-17 21:58 280KPDF prediction and alignment data
[ ]jp__DuosYr.concise.ps2015-04-17 21:58 5.2MPrediction: coiled-coil, solvent, alignment
[ ]jp__DuosYr.fasta2015-04-17 21:53 221 Input query sequence in FASTA format
[ ]jp__DuosYr.full_MSA.fasta2015-04-17 21:58 190KFull MSA before JPred filters in FASTA
[TXT]jp__DuosYr.full_MSA.fasta.noGaps.html2015-04-17 21:58 110KFull MSA before JPred filters in FASTA
[TXT]jp__DuosYr.full_MSA.fasta.withGaps.html2015-04-17 21:58 899KFull MSA before JPred filters in FASTA
[ ]jp__DuosYr.hmm2015-04-17 21:58 39KHHMer2 profile of the alignment
[TXT]jp__DuosYr.html2015-04-17 21:58 97KHTML prediction and alignment data
[ ]jp__DuosYr.input2015-04-17 19:23 213 Raw input data for analysis
[ ]jp__DuosYr.jalview2015-04-17 21:58 4.9KJalview annotation file for alignment
[ ]jp__DuosYr.jnet2015-04-17 21:58 7.6KJnet secondary structure output
[TXT]jp__DuosYr.profile2015-04-17 21:56 33KPSIBLAST profile from alignment
[ ]jp__DuosYr.pssm2015-04-17 21:58 44KPSIBLAST PSSM for Jnet
[TXT]jp__DuosYr.results.html2016-02-15 12:20 91KJPred results page
[TXT]jp__DuosYr.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__DuosYr.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__DuosYr.seq2015-04-17 19:23 221 Sequence data file
[TXT]jp__DuosYr.simple.html2015-04-17 21:58 1.7KBrief HTML: sequence and prediction only
[TXT]jp__DuosYr.svg.html2015-04-17 21:58 83KJalview SVG summary of results
[ ]jp__DuosYr.tar.gz2015-04-17 21:58 567KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.