JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2o3la1.name2015-04-17 18:12 0 Job name flag file
[ ]jp_ryuTm4K.align2015-04-17 19:57 16KPSIBLAST alignment in FASTA format
[TXT]jp_ryuTm4K.als2015-04-17 19:57 1.9KAlscript command file for PS/PDF output
[ ]jp_ryuTm4K.blast.gz2015-04-17 19:57 53KCompressed PSIBLAST output file
[TXT]jp_ryuTm4K.coils.csv2015-04-17 19:57 522 COILS output in CSV format
[ ]jp_ryuTm4K.coilseq.lupas_142015-04-17 19:57 3.4KCOILS output, window length 14
[ ]jp_ryuTm4K.coilseq.lupas_212015-04-17 19:57 3.4KCOILS output, window length 21
[ ]jp_ryuTm4K.coilseq.lupas_282015-04-17 19:57 3.4KCOILS output, window length 28
[ ]jp_ryuTm4K.concise2015-04-17 19:57 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_ryuTm4K.concise.blc2015-04-17 19:57 17KBLC format prediction and alignment data
[ ]jp_ryuTm4K.concise.fasta2015-04-17 19:57 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_ryuTm4K.concise.pdf2015-04-17 19:57 103KPDF prediction and alignment data
[ ]jp_ryuTm4K.concise.ps2015-04-17 19:57 1.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_ryuTm4K.fasta2015-04-17 19:54 96 Input query sequence in FASTA format
[ ]jp_ryuTm4K.full_MSA.fasta2015-04-17 19:57 42KFull MSA before JPred filters in FASTA
[TXT]jp_ryuTm4K.full_MSA.fasta.noGaps.html2015-04-17 19:57 64KFull MSA before JPred filters in FASTA
[TXT]jp_ryuTm4K.full_MSA.fasta.withGaps.html2015-04-17 19:57 201KFull MSA before JPred filters in FASTA
[ ]jp_ryuTm4K.hmm2015-04-17 19:57 15KHHMer2 profile of the alignment
[TXT]jp_ryuTm4K.html2015-04-17 19:57 56KHTML prediction and alignment data
[ ]jp_ryuTm4K.input2015-04-17 18:12 89 Raw input data for analysis
[ ]jp_ryuTm4K.jalview2015-04-17 19:57 2.5KJalview annotation file for alignment
[ ]jp_ryuTm4K.jnet2015-04-17 19:57 3.1KJnet secondary structure output
[TXT]jp_ryuTm4K.profile2015-04-17 19:56 13KPSIBLAST profile from alignment
[ ]jp_ryuTm4K.pssm2015-04-17 19:57 18KPSIBLAST PSSM for Jnet
[TXT]jp_ryuTm4K.results.html2016-02-15 12:20 43KJPred results page
[TXT]jp_ryuTm4K.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ryuTm4K.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ryuTm4K.seq2015-04-17 18:12 96 Sequence data file
[TXT]jp_ryuTm4K.simple.html2015-04-17 19:57 1.1KBrief HTML: sequence and prediction only
[TXT]jp_ryuTm4K.svg.html2015-04-17 19:58 35KJalview SVG summary of results
[ ]jp_ryuTm4K.tar.gz2015-04-17 19:58 236KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.