JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:55 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2otaa1.name2015-04-17 17:33 0 Job name flag file
[ ]jp_wBusVb2.align2015-04-17 18:55 6.5KPSIBLAST alignment in FASTA format
[TXT]jp_wBusVb2.als2015-04-17 18:55 1.6KAlscript command file for PS/PDF output
[ ]jp_wBusVb2.blast.gz2015-04-17 18:55 25KCompressed PSIBLAST output file
[TXT]jp_wBusVb2.coils.csv2015-04-17 18:55 402 COILS output in CSV format
[ ]jp_wBusVb2.coilseq.lupas_142015-04-17 18:55 2.6KCOILS output, window length 14
[ ]jp_wBusVb2.coilseq.lupas_212015-04-17 18:55 2.6KCOILS output, window length 21
[ ]jp_wBusVb2.coilseq.lupas_282015-04-17 18:55 2.6KCOILS output, window length 28
[ ]jp_wBusVb2.concise2015-04-17 18:55 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_wBusVb2.concise.blc2015-04-17 18:55 7.4KBLC format prediction and alignment data
[ ]jp_wBusVb2.concise.fasta2015-04-17 18:55 7.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_wBusVb2.concise.pdf2015-04-17 18:55 48KPDF prediction and alignment data
[ ]jp_wBusVb2.concise.ps2015-04-17 18:55 818KPrediction: coiled-coil, solvent, alignment
[ ]jp_wBusVb2.fasta2015-04-17 18:48 75 Input query sequence in FASTA format
[ ]jp_wBusVb2.full_MSA.fasta2015-04-17 18:55 18KFull MSA before JPred filters in FASTA
[TXT]jp_wBusVb2.full_MSA.fasta.noGaps.html2015-04-17 18:55 31KFull MSA before JPred filters in FASTA
[TXT]jp_wBusVb2.full_MSA.fasta.withGaps.html2015-04-17 18:55 68KFull MSA before JPred filters in FASTA
[ ]jp_wBusVb2.hmm2015-04-17 18:55 12KHHMer2 profile of the alignment
[TXT]jp_wBusVb2.html2015-04-17 18:55 32KHTML prediction and alignment data
[ ]jp_wBusVb2.input2015-04-17 17:33 69 Raw input data for analysis
[ ]jp_wBusVb2.jalview2015-04-17 18:55 2.1KJalview annotation file for alignment
[ ]jp_wBusVb2.jnet2015-04-17 18:55 2.4KJnet secondary structure output
[TXT]jp_wBusVb2.profile2015-04-17 18:53 10KPSIBLAST profile from alignment
[ ]jp_wBusVb2.pssm2015-04-17 18:55 13KPSIBLAST PSSM for Jnet
[TXT]jp_wBusVb2.results.html2016-02-15 12:20 35KJPred results page
[TXT]jp_wBusVb2.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_wBusVb2.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_wBusVb2.seq2015-04-17 17:33 75 Sequence data file
[TXT]jp_wBusVb2.simple.html2015-04-17 18:55 1.0KBrief HTML: sequence and prediction only
[TXT]jp_wBusVb2.svg.html2015-04-17 18:55 27KJalview SVG summary of results
[ ]jp_wBusVb2.tar.gz2015-04-17 18:55 116KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.