JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:57 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2oy9a1.name2015-04-17 16:56 0 Job name flag file
[ ]jp_j5rV40K.align2015-04-17 17:57 26KPSIBLAST alignment in FASTA format
[TXT]jp_j5rV40K.als2015-04-17 17:57 1.9KAlscript command file for PS/PDF output
[ ]jp_j5rV40K.blast.gz2015-04-17 17:57 65KCompressed PSIBLAST output file
[TXT]jp_j5rV40K.coils.csv2015-04-17 17:57 540 COILS output in CSV format
[ ]jp_j5rV40K.coilseq.lupas_142015-04-17 17:57 3.6KCOILS output, window length 14
[ ]jp_j5rV40K.coilseq.lupas_212015-04-17 17:57 3.6KCOILS output, window length 21
[ ]jp_j5rV40K.coilseq.lupas_282015-04-17 17:57 3.6KCOILS output, window length 28
[ ]jp_j5rV40K.concise2015-04-17 17:57 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_j5rV40K.concise.blc2015-04-17 17:57 27KBLC format prediction and alignment data
[ ]jp_j5rV40K.concise.fasta2015-04-17 17:57 27KPrediction: coiled-coil, solvent, alignment
[ ]jp_j5rV40K.concise.pdf2015-04-17 17:57 157KPDF prediction and alignment data
[ ]jp_j5rV40K.concise.ps2015-04-17 17:57 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_j5rV40K.fasta2015-04-17 17:54 99 Input query sequence in FASTA format
[ ]jp_j5rV40K.full_MSA.fasta2015-04-17 17:57 43KFull MSA before JPred filters in FASTA
[TXT]jp_j5rV40K.full_MSA.fasta.noGaps.html2015-04-17 17:57 77KFull MSA before JPred filters in FASTA
[TXT]jp_j5rV40K.full_MSA.fasta.withGaps.html2015-04-17 17:57 205KFull MSA before JPred filters in FASTA
[ ]jp_j5rV40K.hmm2015-04-17 17:57 16KHHMer2 profile of the alignment
[TXT]jp_j5rV40K.html2015-04-17 17:57 85KHTML prediction and alignment data
[ ]jp_j5rV40K.input2015-04-17 16:56 92 Raw input data for analysis
[ ]jp_j5rV40K.jalview2015-04-17 17:57 2.6KJalview annotation file for alignment
[ ]jp_j5rV40K.jnet2015-04-17 17:57 3.2KJnet secondary structure output
[TXT]jp_j5rV40K.profile2015-04-17 17:55 14KPSIBLAST profile from alignment
[ ]jp_j5rV40K.pssm2015-04-17 17:57 18KPSIBLAST PSSM for Jnet
[TXT]jp_j5rV40K.results.html2016-02-15 12:20 44KJPred results page
[TXT]jp_j5rV40K.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_j5rV40K.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_j5rV40K.seq2015-04-17 16:56 99 Sequence data file
[TXT]jp_j5rV40K.simple.html2015-04-17 17:57 1.1KBrief HTML: sequence and prediction only
[TXT]jp_j5rV40K.svg.html2015-04-17 17:57 36KJalview SVG summary of results
[ ]jp_j5rV40K.tar.gz2015-04-17 17:57 317KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.