JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]jp_ND0iReh.als2015-04-17 15:59 1.6KAlscript command file for PS/PDF output
[ ]jp_ND0iReh.tar.gz2015-04-17 15:59 186KArchive containing complete results
[ ]jp_ND0iReh.concise.blc2015-04-17 15:59 15KBLC format prediction and alignment data
[TXT]jp_ND0iReh.simple.html2015-04-17 15:59 1.1KBrief HTML: sequence and prediction only
[TXT]jp_ND0iReh.coils.csv2015-04-17 15:59 480 COILS output in CSV format
[ ]jp_ND0iReh.coilseq.lupas_142015-04-17 15:59 3.1KCOILS output, window length 14
[ ]jp_ND0iReh.coilseq.lupas_212015-04-17 15:59 3.1KCOILS output, window length 21
[ ]jp_ND0iReh.coilseq.lupas_282015-04-17 15:59 3.1KCOILS output, window length 28
[ ]jp_ND0iReh.blast.gz2015-04-17 15:59 28KCompressed PSIBLAST output file
[ ]jp_ND0iReh.full_MSA.fasta2015-04-17 15:59 36KFull MSA before JPred filters in FASTA
[TXT]jp_ND0iReh.full_MSA.fasta.noGaps.html2015-04-17 15:59 41KFull MSA before JPred filters in FASTA
[TXT]jp_ND0iReh.full_MSA.fasta.withGaps.html2015-04-17 15:59 147KFull MSA before JPred filters in FASTA
[ ]jp_ND0iReh.hmm2015-04-17 15:59 14KHHMer2 profile of the alignment
[TXT]jp_ND0iReh.html2015-04-17 15:59 54KHTML prediction and alignment data
[TXT]jp_ND0iReh.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ND0iReh.fasta2015-04-17 15:57 89 Input query sequence in FASTA format
[TXT]jp_ND0iReh.results.html2016-02-15 12:20 40KJPred results page
[TXT]LOG2015-04-17 15:59 4.7KJPred server log file
[TXT]jp_ND0iReh.svg.html2015-04-17 15:59 32KJalview SVG summary of results
[ ]jp_ND0iReh.jalview2015-04-17 15:59 2.4KJalview annotation file for alignment
[TXT]jp_ND0iReh.results_jalview.html2016-02-24 17:18 13KJalview results options
[ ]jp_ND0iReh.jnet2015-04-17 15:59 2.8KJnet secondary structure output
[TXT]d2pmra1.name2015-04-17 15:44 0 Job name flag file
[ ]jp_ND0iReh.concise.pdf2015-04-17 15:59 89KPDF prediction and alignment data
[ ]jp_ND0iReh.pssm2015-04-17 15:59 16KPSIBLAST PSSM for Jnet
[ ]jp_ND0iReh.align2015-04-17 15:59 14KPSIBLAST alignment in FASTA format
[TXT]jp_ND0iReh.profile2015-04-17 15:59 12KPSIBLAST profile from alignment
[ ]jp_ND0iReh.concise2015-04-17 15:59 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_ND0iReh.concise.fasta2015-04-17 15:59 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_ND0iReh.concise.ps2015-04-17 15:59 1.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_ND0iReh.input2015-04-17 15:44 82 Raw input data for analysis
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[ ]jp_ND0iReh.seq2015-04-17 15:44 89 Sequence data file
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.