JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:25 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2q6ka2.name2015-04-17 15:44 0 Job name flag file
[ ]jp_dtXb6Dp.align2015-04-17 16:24 79KPSIBLAST alignment in FASTA format
[TXT]jp_dtXb6Dp.als2015-04-17 16:24 2.4KAlscript command file for PS/PDF output
[ ]jp_dtXb6Dp.blast.gz2015-04-17 16:24 321KCompressed PSIBLAST output file
[TXT]jp_dtXb6Dp.coils.csv2015-04-17 16:24 546 COILS output in CSV format
[ ]jp_dtXb6Dp.coilseq.lupas_142015-04-17 16:24 3.6KCOILS output, window length 14
[ ]jp_dtXb6Dp.coilseq.lupas_212015-04-17 16:24 3.6KCOILS output, window length 21
[ ]jp_dtXb6Dp.coilseq.lupas_282015-04-17 16:24 3.6KCOILS output, window length 28
[ ]jp_dtXb6Dp.concise2015-04-17 16:24 152KPrediction: coiled-coil, solvent, alignment
[ ]jp_dtXb6Dp.concise.blc2015-04-17 16:24 79KBLC format prediction and alignment data
[ ]jp_dtXb6Dp.concise.fasta2015-04-17 16:24 80KPrediction: coiled-coil, solvent, alignment
[ ]jp_dtXb6Dp.concise.pdf2015-04-17 16:24 533KPDF prediction and alignment data
[ ]jp_dtXb6Dp.concise.ps2015-04-17 16:24 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_dtXb6Dp.fasta2015-04-17 15:57 100 Input query sequence in FASTA format
[ ]jp_dtXb6Dp.full_MSA.fasta2015-04-17 16:24 623KFull MSA before JPred filters in FASTA
[TXT]jp_dtXb6Dp.full_MSA.fasta.noGaps.html2015-04-17 16:24 208KFull MSA before JPred filters in FASTA
[TXT]jp_dtXb6Dp.full_MSA.fasta.withGaps.html2015-04-17 16:24 2.0MFull MSA before JPred filters in FASTA
[ ]jp_dtXb6Dp.hmm2015-04-17 16:24 16KHHMer2 profile of the alignment
[TXT]jp_dtXb6Dp.html2015-04-17 16:24 235KHTML prediction and alignment data
[ ]jp_dtXb6Dp.input2015-04-17 15:44 93 Raw input data for analysis
[ ]jp_dtXb6Dp.jalview2015-04-17 16:24 2.5KJalview annotation file for alignment
[ ]jp_dtXb6Dp.jnet2015-04-17 16:24 3.2KJnet secondary structure output
[TXT]jp_dtXb6Dp.profile2015-04-17 16:18 14KPSIBLAST profile from alignment
[ ]jp_dtXb6Dp.pssm2015-04-17 16:24 18KPSIBLAST PSSM for Jnet
[TXT]jp_dtXb6Dp.results.html2016-02-15 12:20 45KJPred results page
[TXT]jp_dtXb6Dp.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_dtXb6Dp.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_dtXb6Dp.seq2015-04-17 15:44 100 Sequence data file
[TXT]jp_dtXb6Dp.simple.html2015-04-17 16:24 1.2KBrief HTML: sequence and prediction only
[TXT]jp_dtXb6Dp.svg.html2015-04-17 16:25 37KJalview SVG summary of results
[ ]jp_dtXb6Dp.tar.gz2015-04-17 16:25 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.