JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2qklb_.name2015-04-17 17:34 0 Job name flag file
[ ]jp_yoI78fe.align2015-04-17 18:56 21KPSIBLAST alignment in FASTA format
[TXT]jp_yoI78fe.als2015-04-17 18:56 2.0KAlscript command file for PS/PDF output
[ ]jp_yoI78fe.blast.gz2015-04-17 18:56 136KCompressed PSIBLAST output file
[TXT]jp_yoI78fe.coils.csv2015-04-17 18:56 570 COILS output in CSV format
[ ]jp_yoI78fe.coilseq.lupas_142015-04-17 18:56 3.8KCOILS output, window length 14
[ ]jp_yoI78fe.coilseq.lupas_212015-04-17 18:56 3.8KCOILS output, window length 21
[ ]jp_yoI78fe.coilseq.lupas_282015-04-17 18:56 3.8KCOILS output, window length 28
[ ]jp_yoI78fe.concise2015-04-17 18:56 43KPrediction: coiled-coil, solvent, alignment
[ ]jp_yoI78fe.concise.blc2015-04-17 18:56 22KBLC format prediction and alignment data
[ ]jp_yoI78fe.concise.fasta2015-04-17 18:56 22KPrediction: coiled-coil, solvent, alignment
[ ]jp_yoI78fe.concise.pdf2015-04-17 18:56 148KPDF prediction and alignment data
[ ]jp_yoI78fe.concise.ps2015-04-17 18:56 2.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_yoI78fe.fasta2015-04-17 18:50 104 Input query sequence in FASTA format
[ ]jp_yoI78fe.full_MSA.fasta2015-04-17 18:56 185KFull MSA before JPred filters in FASTA
[TXT]jp_yoI78fe.full_MSA.fasta.noGaps.html2015-04-17 18:56 99KFull MSA before JPred filters in FASTA
[TXT]jp_yoI78fe.full_MSA.fasta.withGaps.html2015-04-17 18:56 695KFull MSA before JPred filters in FASTA
[ ]jp_yoI78fe.hmm2015-04-17 18:56 17KHHMer2 profile of the alignment
[TXT]jp_yoI78fe.html2015-04-17 18:56 69KHTML prediction and alignment data
[ ]jp_yoI78fe.input2015-04-17 17:34 97 Raw input data for analysis
[ ]jp_yoI78fe.jalview2015-04-17 18:56 2.6KJalview annotation file for alignment
[ ]jp_yoI78fe.jnet2015-04-17 18:56 3.4KJnet secondary structure output
[TXT]jp_yoI78fe.profile2015-04-17 18:54 15KPSIBLAST profile from alignment
[ ]jp_yoI78fe.pssm2015-04-17 18:56 19KPSIBLAST PSSM for Jnet
[TXT]jp_yoI78fe.results.html2016-02-15 12:20 46KJPred results page
[TXT]jp_yoI78fe.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_yoI78fe.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_yoI78fe.seq2015-04-17 17:34 104 Sequence data file
[TXT]jp_yoI78fe.simple.html2015-04-17 18:56 1.2KBrief HTML: sequence and prediction only
[TXT]jp_yoI78fe.svg.html2015-04-17 18:56 38KJalview SVG summary of results
[ ]jp_yoI78fe.tar.gz2015-04-17 18:56 409KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.