JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:04 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2vfxa_.name2015-04-17 16:59 0 Job name flag file
[ ]jp_yd7yIQO.align2015-04-17 18:04 119KPSIBLAST alignment in FASTA format
[TXT]jp_yd7yIQO.als2015-04-17 18:04 2.7KAlscript command file for PS/PDF output
[ ]jp_yd7yIQO.blast.gz2015-04-17 18:03 828KCompressed PSIBLAST output file
[TXT]jp_yd7yIQO.coils.csv2015-04-17 18:04 1.2KCOILS output in CSV format
[ ]jp_yd7yIQO.coilseq.lupas_142015-04-17 18:04 8.5KCOILS output, window length 14
[ ]jp_yd7yIQO.coilseq.lupas_212015-04-17 18:04 8.5KCOILS output, window length 21
[ ]jp_yd7yIQO.coilseq.lupas_282015-04-17 18:04 8.5KCOILS output, window length 28
[ ]jp_yd7yIQO.concise2015-04-17 18:04 238KPrediction: coiled-coil, solvent, alignment
[ ]jp_yd7yIQO.concise.blc2015-04-17 18:04 120KBLC format prediction and alignment data
[ ]jp_yd7yIQO.concise.fasta2015-04-17 18:04 121KPrediction: coiled-coil, solvent, alignment
[ ]jp_yd7yIQO.concise.pdf2015-04-17 18:04 808KPDF prediction and alignment data
[ ]jp_yd7yIQO.concise.ps2015-04-17 18:04 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_yd7yIQO.fasta2015-04-17 17:58 218 Input query sequence in FASTA format
[ ]jp_yd7yIQO.full_MSA.fasta2015-04-17 18:03 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_yd7yIQO.full_MSA.fasta.noGaps.html2015-04-17 18:04 285KFull MSA before JPred filters in FASTA
[TXT]jp_yd7yIQO.full_MSA.fasta.withGaps.html2015-04-17 18:04 5.3MFull MSA before JPred filters in FASTA
[ ]jp_yd7yIQO.hmm2015-04-17 18:04 38KHHMer2 profile of the alignment
[TXT]jp_yd7yIQO.html2015-04-17 18:04 243KHTML prediction and alignment data
[ ]jp_yd7yIQO.input2015-04-17 16:59 210 Raw input data for analysis
[ ]jp_yd7yIQO.jalview2015-04-17 18:04 4.9KJalview annotation file for alignment
[ ]jp_yd7yIQO.jnet2015-04-17 18:04 7.4KJnet secondary structure output
[TXT]jp_yd7yIQO.profile2015-04-17 18:02 33KPSIBLAST profile from alignment
[ ]jp_yd7yIQO.pssm2015-04-17 18:04 44KPSIBLAST PSSM for Jnet
[TXT]jp_yd7yIQO.results.html2016-02-15 12:20 88KJPred results page
[TXT]jp_yd7yIQO.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_yd7yIQO.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_yd7yIQO.seq2015-04-17 16:59 218 Sequence data file
[TXT]jp_yd7yIQO.simple.html2015-04-17 18:04 1.5KBrief HTML: sequence and prediction only
[TXT]jp_yd7yIQO.svg.html2015-04-17 18:04 79KJalview SVG summary of results
[ ]jp_yd7yIQO.tar.gz2015-04-17 18:04 2.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.