JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2wbma1.name2015-04-17 16:23 0 Job name flag file
[ ]jp_okhwBVk.align2015-04-17 16:56 103KPSIBLAST alignment in FASTA format
[TXT]jp_okhwBVk.als2015-04-17 16:56 3.7KAlscript command file for PS/PDF output
[ ]jp_okhwBVk.blast.gz2015-04-17 16:56 528KCompressed PSIBLAST output file
[TXT]jp_okhwBVk.coils.csv2015-04-17 16:56 1.4KCOILS output in CSV format
[ ]jp_okhwBVk.coilseq.lupas_142015-04-17 16:56 9.8KCOILS output, window length 14
[ ]jp_okhwBVk.coilseq.lupas_212015-04-17 16:56 9.8KCOILS output, window length 21
[ ]jp_okhwBVk.coilseq.lupas_282015-04-17 16:56 9.8KCOILS output, window length 28
[ ]jp_okhwBVk.concise2015-04-17 16:56 210KPrediction: coiled-coil, solvent, alignment
[ ]jp_okhwBVk.concise.blc2015-04-17 16:56 105KBLC format prediction and alignment data
[ ]jp_okhwBVk.concise.fasta2015-04-17 16:56 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_okhwBVk.concise.pdf2015-04-17 16:56 715KPDF prediction and alignment data
[ ]jp_okhwBVk.concise.ps2015-04-17 16:56 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_okhwBVk.fasta2015-04-17 16:53 250 Input query sequence in FASTA format
[ ]jp_okhwBVk.full_MSA.fasta2015-04-17 16:56 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_okhwBVk.full_MSA.fasta.noGaps.html2015-04-17 16:56 275KFull MSA before JPred filters in FASTA
[TXT]jp_okhwBVk.full_MSA.fasta.withGaps.html2015-04-17 16:56 3.4MFull MSA before JPred filters in FASTA
[ ]jp_okhwBVk.hmm2015-04-17 16:56 44KHHMer2 profile of the alignment
[TXT]jp_okhwBVk.html2015-04-17 16:56 206KHTML prediction and alignment data
[ ]jp_okhwBVk.input2015-04-17 16:23 241 Raw input data for analysis
[ ]jp_okhwBVk.jalview2015-04-17 16:56 5.6KJalview annotation file for alignment
[ ]jp_okhwBVk.jnet2015-04-17 16:56 8.6KJnet secondary structure output
[TXT]jp_okhwBVk.profile2015-04-17 16:55 38KPSIBLAST profile from alignment
[ ]jp_okhwBVk.pssm2015-04-17 16:56 50KPSIBLAST PSSM for Jnet
[TXT]jp_okhwBVk.results.html2016-02-15 12:20 103KJPred results page
[TXT]jp_okhwBVk.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_okhwBVk.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_okhwBVk.seq2015-04-17 16:23 250 Sequence data file
[TXT]jp_okhwBVk.simple.html2015-04-17 16:56 1.7KBrief HTML: sequence and prediction only
[TXT]jp_okhwBVk.svg.html2015-04-17 16:56 95KJalview SVG summary of results
[ ]jp_okhwBVk.tar.gz2015-04-17 16:56 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.