JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:03 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2xi8a_.name2015-04-17 16:23 0 Job name flag file
[ ]jp_NpwEput.align2015-04-17 17:02 72KPSIBLAST alignment in FASTA format
[TXT]jp_NpwEput.als2015-04-17 17:02 1.9KAlscript command file for PS/PDF output
[ ]jp_NpwEput.blast.gz2015-04-17 17:02 1.9MCompressed PSIBLAST output file
[TXT]jp_NpwEput.coils.csv2015-04-17 17:02 426 COILS output in CSV format
[ ]jp_NpwEput.coilseq.lupas_142015-04-17 17:02 2.8KCOILS output, window length 14
[ ]jp_NpwEput.coilseq.lupas_212015-04-17 17:02 2.8KCOILS output, window length 21
[ ]jp_NpwEput.coilseq.lupas_282015-04-17 17:02 2.8KCOILS output, window length 28
[ ]jp_NpwEput.concise2015-04-17 17:02 137KPrediction: coiled-coil, solvent, alignment
[ ]jp_NpwEput.concise.blc2015-04-17 17:02 72KBLC format prediction and alignment data
[ ]jp_NpwEput.concise.fasta2015-04-17 17:02 73KPrediction: coiled-coil, solvent, alignment
[ ]jp_NpwEput.concise.pdf2015-04-17 17:03 457KPDF prediction and alignment data
[ ]jp_NpwEput.concise.ps2015-04-17 17:02 7.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_NpwEput.fasta2015-04-17 16:53 79 Input query sequence in FASTA format
[ ]jp_NpwEput.full_MSA.fasta2015-04-17 17:02 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_NpwEput.full_MSA.fasta.noGaps.html2015-04-17 17:03 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_NpwEput.full_MSA.fasta.withGaps.html2015-04-17 17:03 14MFull MSA before JPred filters in FASTA
[ ]jp_NpwEput.hmm2015-04-17 17:02 12KHHMer2 profile of the alignment
[TXT]jp_NpwEput.html2015-04-17 17:02 246KHTML prediction and alignment data
[ ]jp_NpwEput.input2015-04-17 16:23 73 Raw input data for analysis
[ ]jp_NpwEput.jalview2015-04-17 17:02 2.1KJalview annotation file for alignment
[ ]jp_NpwEput.jnet2015-04-17 17:02 2.5KJnet secondary structure output
[TXT]jp_NpwEput.profile2015-04-17 17:00 11KPSIBLAST profile from alignment
[ ]jp_NpwEput.pssm2015-04-17 17:02 14KPSIBLAST PSSM for Jnet
[TXT]jp_NpwEput.results.html2016-02-15 12:20 38KJPred results page
[TXT]jp_NpwEput.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_NpwEput.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_NpwEput.seq2015-04-17 16:23 79 Sequence data file
[TXT]jp_NpwEput.simple.html2015-04-17 17:02 1.1KBrief HTML: sequence and prediction only
[TXT]jp_NpwEput.svg.html2015-04-17 17:03 30KJalview SVG summary of results
[ ]jp_NpwEput.tar.gz2015-04-17 17:03 4.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.