JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:03 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ylba_.name2015-04-17 19:25 0 Job name flag file
[ ]jp_y0vAsyT.align2015-04-17 22:02 28KPSIBLAST alignment in FASTA format
[TXT]jp_y0vAsyT.als2015-04-17 22:02 2.1KAlscript command file for PS/PDF output
[ ]jp_y0vAsyT.blast.gz2015-04-17 22:02 171KCompressed PSIBLAST output file
[TXT]jp_y0vAsyT.coils.csv2015-04-17 22:02 420 COILS output in CSV format
[ ]jp_y0vAsyT.coilseq.lupas_142015-04-17 22:02 2.7KCOILS output, window length 14
[ ]jp_y0vAsyT.coilseq.lupas_212015-04-17 22:02 2.7KCOILS output, window length 21
[ ]jp_y0vAsyT.coilseq.lupas_282015-04-17 22:02 2.7KCOILS output, window length 28
[ ]jp_y0vAsyT.concise2015-04-17 22:02 56KPrediction: coiled-coil, solvent, alignment
[ ]jp_y0vAsyT.concise.blc2015-04-17 22:02 29KBLC format prediction and alignment data
[ ]jp_y0vAsyT.concise.fasta2015-04-17 22:02 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_y0vAsyT.concise.pdf2015-04-17 22:03 174KPDF prediction and alignment data
[ ]jp_y0vAsyT.concise.ps2015-04-17 22:02 3.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_y0vAsyT.fasta2015-04-17 21:58 78 Input query sequence in FASTA format
[ ]jp_y0vAsyT.full_MSA.fasta2015-04-17 22:02 184KFull MSA before JPred filters in FASTA
[TXT]jp_y0vAsyT.full_MSA.fasta.noGaps.html2015-04-17 22:03 235KFull MSA before JPred filters in FASTA
[TXT]jp_y0vAsyT.full_MSA.fasta.withGaps.html2015-04-17 22:03 904KFull MSA before JPred filters in FASTA
[ ]jp_y0vAsyT.hmm2015-04-17 22:02 12KHHMer2 profile of the alignment
[TXT]jp_y0vAsyT.html2015-04-17 22:02 103KHTML prediction and alignment data
[ ]jp_y0vAsyT.input2015-04-17 19:25 72 Raw input data for analysis
[ ]jp_y0vAsyT.jalview2015-04-17 22:02 2.1KJalview annotation file for alignment
[ ]jp_y0vAsyT.jnet2015-04-17 22:02 2.5KJnet secondary structure output
[TXT]jp_y0vAsyT.profile2015-04-17 22:01 11KPSIBLAST profile from alignment
[ ]jp_y0vAsyT.pssm2015-04-17 22:02 14KPSIBLAST PSSM for Jnet
[TXT]jp_y0vAsyT.results.html2016-02-15 12:20 37KJPred results page
[TXT]jp_y0vAsyT.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_y0vAsyT.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_y0vAsyT.seq2015-04-17 19:25 78 Sequence data file
[TXT]jp_y0vAsyT.simple.html2015-04-17 22:02 1.1KBrief HTML: sequence and prediction only
[TXT]jp_y0vAsyT.svg.html2015-04-17 22:03 29KJalview SVG summary of results
[ ]jp_y0vAsyT.tar.gz2015-04-17 22:03 486KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.