A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 19:00 | 4.7K | JPred server log file |
| README | 2016-02-15 12:20 | 2.1K | Results file descriptions |
| d3a9sa2.name | 2015-04-17 17:37 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_hRMpIf2.align | 2015-04-17 19:00 | 37K | PSIBLAST alignment in FASTA format |
| jp_hRMpIf2.als | 2015-04-17 19:00 | 3.8K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_hRMpIf2.blast.gz | 2015-04-17 19:00 | 131K | Compressed PSIBLAST output file |
| jp_hRMpIf2.coils.csv | 2015-04-17 19:00 | 1.4K | COILS output in CSV format |
| jp_hRMpIf2.coilseq.lupas_14 | 2015-04-17 19:00 | 9.7K | COILS output, window length 14 |
| jp_hRMpIf2.coilseq.lupas_21 | 2015-04-17 19:00 | 9.7K | COILS output, window length 21 |
| jp_hRMpIf2.coilseq.lupas_28 | 2015-04-17 19:00 | 9.7K | COILS output, window length 28 |
| jp_hRMpIf2.concise | 2015-04-17 19:00 | 82K | Prediction: coiled-coil, solvent, alignment |
| jp_hRMpIf2.concise.blc | 2015-04-17 19:00 | 40K | BLC format prediction and alignment data |
| jp_hRMpIf2.concise.fasta | 2015-04-17 19:00 | 40K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_hRMpIf2.concise.pdf | 2015-04-17 19:00 | 247K | PDF prediction and alignment data |
| jp_hRMpIf2.concise.ps | 2015-04-17 19:00 | 4.7M | Prediction: coiled-coil, solvent, alignment |
| jp_hRMpIf2.fasta | 2015-04-17 18:55 | 246 | Input query sequence in FASTA format |
| jp_hRMpIf2.full_MSA.fasta | 2015-04-17 19:00 | 182K | Full MSA before JPred filters in FASTA |
| jp_hRMpIf2.full_MSA.fasta.noGaps.html | 2015-04-17 19:00 | 160K | Full MSA before JPred filters in FASTA |
| jp_hRMpIf2.full_MSA.fasta.withGaps.html | 2015-04-17 19:00 | 1.0M | Full MSA before JPred filters in FASTA |
| jp_hRMpIf2.hmm | 2015-04-17 19:00 | 43K | HHMer2 profile of the alignment |
| jp_hRMpIf2.html | 2015-04-17 19:00 | 86K | HTML prediction and alignment data |
| jp_hRMpIf2.input | 2015-04-17 17:37 | 237 | Raw input data for analysis |
| jp_hRMpIf2.jalview | 2015-04-17 19:00 | 5.4K | Jalview annotation file for alignment |
| jp_hRMpIf2.jnet | 2015-04-17 19:00 | 8.4K | Jnet secondary structure output |
| jp_hRMpIf2.profile | 2015-04-17 18:59 | 37K | PSIBLAST profile from alignment |
| jp_hRMpIf2.pssm | 2015-04-17 19:00 | 49K | PSIBLAST PSSM for Jnet |
| jp_hRMpIf2.results.html | 2016-02-15 12:20 | 103K | JPred results page |
| jp_hRMpIf2.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_hRMpIf2.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_hRMpIf2.seq | 2015-04-17 17:37 | 246 | Sequence data file |
| jp_hRMpIf2.simple.html | 2015-04-17 19:00 | 1.8K | Brief HTML: sequence and prediction only |
![[TXT]](jp_hRMpIf2.svg.html) | jp_hRMpIf2.svg.html | 2015-04-17 19:00 | 95K | Jalview SVG summary of results |
| jp_hRMpIf2.tar.gz | 2015-04-17 19:00 | 566K | Archive containing complete results |
