JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:28 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3amra_.name2015-04-17 17:38 0 Job name flag file
[ ]jp_4x1muai.align2015-04-17 19:28 187KPSIBLAST alignment in FASTA format
[TXT]jp_4x1muai.als2015-04-17 19:28 5.2KAlscript command file for PS/PDF output
[ ]jp_4x1muai.blast.gz2015-04-17 19:27 1.0MCompressed PSIBLAST output file
[TXT]jp_4x1muai.coils.csv2015-04-17 19:28 2.1KCOILS output in CSV format
[ ]jp_4x1muai.coilseq.lupas_142015-04-17 19:28 15KCOILS output, window length 14
[ ]jp_4x1muai.coilseq.lupas_212015-04-17 19:28 15KCOILS output, window length 21
[ ]jp_4x1muai.coilseq.lupas_282015-04-17 19:28 15KCOILS output, window length 28
[ ]jp_4x1muai.concise2015-04-17 19:28 379KPrediction: coiled-coil, solvent, alignment
[ ]jp_4x1muai.concise.blc2015-04-17 19:28 190KBLC format prediction and alignment data
[ ]jp_4x1muai.concise.fasta2015-04-17 19:28 191KPrediction: coiled-coil, solvent, alignment
[ ]jp_4x1muai.concise.pdf2015-04-17 19:28 1.2MPDF prediction and alignment data
[ ]jp_4x1muai.concise.ps2015-04-17 19:28 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_4x1muai.fasta2015-04-17 18:58 369 Input query sequence in FASTA format
[ ]jp_4x1muai.full_MSA.fasta2015-04-17 19:28 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_4x1muai.full_MSA.fasta.noGaps.html2015-04-17 19:28 402KFull MSA before JPred filters in FASTA
[TXT]jp_4x1muai.full_MSA.fasta.withGaps.html2015-04-17 19:28 7.4MFull MSA before JPred filters in FASTA
[ ]jp_4x1muai.hmm2015-04-17 19:28 66KHHMer2 profile of the alignment
[TXT]jp_4x1muai.html2015-04-17 19:28 315KHTML prediction and alignment data
[ ]jp_4x1muai.input2015-04-17 17:38 359 Raw input data for analysis
[ ]jp_4x1muai.jalview2015-04-17 19:28 7.8KJalview annotation file for alignment
[ ]jp_4x1muai.jnet2015-04-17 19:28 13KJnet secondary structure output
[TXT]jp_4x1muai.profile2015-04-17 19:19 56KPSIBLAST profile from alignment
[ ]jp_4x1muai.pssm2015-04-17 19:28 76KPSIBLAST PSSM for Jnet
[TXT]jp_4x1muai.results.html2016-02-15 12:20 146KJPred results page
[TXT]jp_4x1muai.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_4x1muai.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_4x1muai.seq2015-04-17 17:38 369 Sequence data file
[TXT]jp_4x1muai.simple.html2015-04-17 19:28 2.2KBrief HTML: sequence and prediction only
[TXT]jp_4x1muai.svg.html2015-04-17 19:28 138KJalview SVG summary of results
[ ]jp_4x1muai.tar.gz2015-04-17 19:28 3.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.