JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:09 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3bbba_.name2015-04-17 17:01 0 Job name flag file
[ ]jp_UJUI35p.align2015-04-17 18:08 115KPSIBLAST alignment in FASTA format
[TXT]jp_UJUI35p.als2015-04-17 18:08 2.7KAlscript command file for PS/PDF output
[ ]jp_UJUI35p.blast.gz2015-04-17 18:07 3.4MCompressed PSIBLAST output file
[TXT]jp_UJUI35p.coils.csv2015-04-17 18:08 936 COILS output in CSV format
[ ]jp_UJUI35p.coilseq.lupas_142015-04-17 18:08 6.3KCOILS output, window length 14
[ ]jp_UJUI35p.coilseq.lupas_212015-04-17 18:08 6.3KCOILS output, window length 21
[ ]jp_UJUI35p.coilseq.lupas_282015-04-17 18:08 6.3KCOILS output, window length 28
[ ]jp_UJUI35p.concise2015-04-17 18:08 225KPrediction: coiled-coil, solvent, alignment
[ ]jp_UJUI35p.concise.blc2015-04-17 18:08 115KBLC format prediction and alignment data
[ ]jp_UJUI35p.concise.fasta2015-04-17 18:08 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_UJUI35p.concise.pdf2015-04-17 18:08 738KPDF prediction and alignment data
[ ]jp_UJUI35p.concise.ps2015-04-17 18:08 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_UJUI35p.fasta2015-04-17 18:01 166 Input query sequence in FASTA format
[ ]jp_UJUI35p.full_MSA.fasta2015-04-17 18:08 6.5MFull MSA before JPred filters in FASTA
[TXT]jp_UJUI35p.full_MSA.fasta.noGaps.html2015-04-17 18:08 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_UJUI35p.full_MSA.fasta.withGaps.html2015-04-17 18:08 21MFull MSA before JPred filters in FASTA
[ ]jp_UJUI35p.hmm2015-04-17 18:08 28KHHMer2 profile of the alignment
[TXT]jp_UJUI35p.html2015-04-17 18:08 259KHTML prediction and alignment data
[ ]jp_UJUI35p.input2015-04-17 17:01 158 Raw input data for analysis
[ ]jp_UJUI35p.jalview2015-04-17 18:08 3.8KJalview annotation file for alignment
[ ]jp_UJUI35p.jnet2015-04-17 18:08 5.6KJnet secondary structure output
[TXT]jp_UJUI35p.profile2015-04-17 18:05 24KPSIBLAST profile from alignment
[ ]jp_UJUI35p.pssm2015-04-17 18:08 32KPSIBLAST PSSM for Jnet
[TXT]jp_UJUI35p.results.html2016-02-15 12:20 71KJPred results page
[TXT]jp_UJUI35p.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_UJUI35p.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_UJUI35p.seq2015-04-17 17:01 166 Sequence data file
[TXT]jp_UJUI35p.simple.html2015-04-17 18:08 1.4KBrief HTML: sequence and prediction only
[TXT]jp_UJUI35p.svg.html2015-04-17 18:08 63KJalview SVG summary of results
[ ]jp_UJUI35p.tar.gz2015-04-17 18:09 6.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.