JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_B7AoAOS.input2015-04-17 15:47 89 Raw input data for analysis
[ ]jp_B7AoAOS.seq2015-04-17 15:47 96 Sequence data file
[TXT]d3bypa1.name2015-04-17 15:47 0 Job name flag file
[ ]jp_B7AoAOS.fasta2015-04-17 16:00 96 Input query sequence in FASTA format
[TXT]jp_B7AoAOS.profile2015-04-17 16:26 13KPSIBLAST profile from alignment
[ ]jp_B7AoAOS.blast.gz2015-04-17 16:36 914KCompressed PSIBLAST output file
[ ]jp_B7AoAOS.full_MSA.fasta2015-04-17 16:36 1.3MFull MSA before JPred filters in FASTA
[ ]jp_B7AoAOS.align2015-04-17 16:36 89KPSIBLAST alignment in FASTA format
[ ]jp_B7AoAOS.pssm2015-04-17 16:36 18KPSIBLAST PSSM for Jnet
[ ]jp_B7AoAOS.hmm2015-04-17 16:36 15KHHMer2 profile of the alignment
[ ]jp_B7AoAOS.jnet2015-04-17 16:36 3.1KJnet secondary structure output
[ ]jp_B7AoAOS.coilseq.lupas_212015-04-17 16:36 3.4KCOILS output, window length 21
[ ]jp_B7AoAOS.coilseq.lupas_142015-04-17 16:36 3.4KCOILS output, window length 14
[ ]jp_B7AoAOS.coilseq.lupas_282015-04-17 16:36 3.4KCOILS output, window length 28
[TXT]jp_B7AoAOS.coils.csv2015-04-17 16:36 522 COILS output in CSV format
[ ]jp_B7AoAOS.concise2015-04-17 16:36 170KPrediction: coiled-coil, solvent, alignment
[TXT]jp_B7AoAOS.html2015-04-17 16:36 271KHTML prediction and alignment data
[TXT]jp_B7AoAOS.simple.html2015-04-17 16:36 1.2KBrief HTML: sequence and prediction only
[ ]jp_B7AoAOS.jalview2015-04-17 16:36 2.5KJalview annotation file for alignment
[ ]jp_B7AoAOS.concise.fasta2015-04-17 16:36 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_B7AoAOS.concise.blc2015-04-17 16:36 89KBLC format prediction and alignment data
[TXT]jp_B7AoAOS.als2015-04-17 16:36 2.0KAlscript command file for PS/PDF output
[ ]jp_B7AoAOS.concise.ps2015-04-17 16:36 10MPrediction: coiled-coil, solvent, alignment
[ ]jp_B7AoAOS.concise.pdf2015-04-17 16:36 630KPDF prediction and alignment data
[TXT]jp_B7AoAOS.full_MSA.fasta.withGaps.html2015-04-17 16:36 8.1MFull MSA before JPred filters in FASTA
[TXT]jp_B7AoAOS.full_MSA.fasta.noGaps.html2015-04-17 16:36 925KFull MSA before JPred filters in FASTA
[TXT]jp_B7AoAOS.svg.html2015-04-17 16:36 35KJalview SVG summary of results
[TXT]LOG2015-04-17 16:37 4.7KJPred server log file
[ ]jp_B7AoAOS.tar.gz2015-04-17 16:37 2.6MArchive containing complete results
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]jp_B7AoAOS.results.html2016-02-15 12:20 43KJPred results page
[TXT]jp_B7AoAOS.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_B7AoAOS.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.