JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:15 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3dgpb_.name2015-04-17 19:00 0 Job name flag file
[ ]jp_RKssCBX.align2015-04-17 21:15 13KPSIBLAST alignment in FASTA format
[TXT]jp_RKssCBX.als2015-04-17 21:15 1.9KAlscript command file for PS/PDF output
[ ]jp_RKssCBX.blast.gz2015-04-17 21:15 42KCompressed PSIBLAST output file
[TXT]jp_RKssCBX.coils.csv2015-04-17 21:15 408 COILS output in CSV format
[ ]jp_RKssCBX.coilseq.lupas_142015-04-17 21:15 2.6KCOILS output, window length 14
[ ]jp_RKssCBX.coilseq.lupas_212015-04-17 21:15 2.6KCOILS output, window length 21
[ ]jp_RKssCBX.coilseq.lupas_282015-04-17 21:15 2.6KCOILS output, window length 28
[ ]jp_RKssCBX.concise2015-04-17 21:15 27KPrediction: coiled-coil, solvent, alignment
[ ]jp_RKssCBX.concise.blc2015-04-17 21:15 14KBLC format prediction and alignment data
[ ]jp_RKssCBX.concise.fasta2015-04-17 21:15 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_RKssCBX.concise.pdf2015-04-17 21:15 86KPDF prediction and alignment data
[ ]jp_RKssCBX.concise.ps2015-04-17 21:15 1.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_RKssCBX.fasta2015-04-17 21:13 76 Input query sequence in FASTA format
[ ]jp_RKssCBX.full_MSA.fasta2015-04-17 21:15 49KFull MSA before JPred filters in FASTA
[TXT]jp_RKssCBX.full_MSA.fasta.noGaps.html2015-04-17 21:15 56KFull MSA before JPred filters in FASTA
[TXT]jp_RKssCBX.full_MSA.fasta.withGaps.html2015-04-17 21:15 228KFull MSA before JPred filters in FASTA
[ ]jp_RKssCBX.hmm2015-04-17 21:15 12KHHMer2 profile of the alignment
[TXT]jp_RKssCBX.html2015-04-17 21:15 53KHTML prediction and alignment data
[ ]jp_RKssCBX.input2015-04-17 19:00 70 Raw input data for analysis
[ ]jp_RKssCBX.jalview2015-04-17 21:15 2.1KJalview annotation file for alignment
[ ]jp_RKssCBX.jnet2015-04-17 21:15 2.4KJnet secondary structure output
[TXT]jp_RKssCBX.profile2015-04-17 21:14 10KPSIBLAST profile from alignment
[ ]jp_RKssCBX.pssm2015-04-17 21:15 14KPSIBLAST PSSM for Jnet
[TXT]jp_RKssCBX.results.html2016-02-15 12:21 36KJPred results page
[TXT]jp_RKssCBX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_RKssCBX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_RKssCBX.seq2015-04-17 19:00 76 Sequence data file
[TXT]jp_RKssCBX.simple.html2015-04-17 21:15 1.1KBrief HTML: sequence and prediction only
[TXT]jp_RKssCBX.svg.html2015-04-17 21:15 28KJalview SVG summary of results
[ ]jp_RKssCBX.tar.gz2015-04-17 21:15 198KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.