JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:05 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3hhta_.name2015-04-17 15:48 0 Job name flag file
[ ]jp_TvzYb9X.align2015-04-17 16:04 37KPSIBLAST alignment in FASTA format
[TXT]jp_TvzYb9X.als2015-04-17 16:04 3.1KAlscript command file for PS/PDF output
[ ]jp_TvzYb9X.blast.gz2015-04-17 16:04 214KCompressed PSIBLAST output file
[TXT]jp_TvzYb9X.coils.csv2015-04-17 16:04 1.2KCOILS output in CSV format
[ ]jp_TvzYb9X.coilseq.lupas_142015-04-17 16:04 8.5KCOILS output, window length 14
[ ]jp_TvzYb9X.coilseq.lupas_212015-04-17 16:04 8.5KCOILS output, window length 21
[ ]jp_TvzYb9X.coilseq.lupas_282015-04-17 16:04 8.5KCOILS output, window length 28
[ ]jp_TvzYb9X.concise2015-04-17 16:04 80KPrediction: coiled-coil, solvent, alignment
[ ]jp_TvzYb9X.concise.blc2015-04-17 16:04 40KBLC format prediction and alignment data
[ ]jp_TvzYb9X.concise.fasta2015-04-17 16:04 39KPrediction: coiled-coil, solvent, alignment
[ ]jp_TvzYb9X.concise.pdf2015-04-17 16:04 255KPDF prediction and alignment data
[ ]jp_TvzYb9X.concise.ps2015-04-17 16:04 4.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_TvzYb9X.fasta2015-04-17 16:02 217 Input query sequence in FASTA format
[ ]jp_TvzYb9X.full_MSA.fasta2015-04-17 16:04 414KFull MSA before JPred filters in FASTA
[TXT]jp_TvzYb9X.full_MSA.fasta.noGaps.html2015-04-17 16:05 205KFull MSA before JPred filters in FASTA
[TXT]jp_TvzYb9X.full_MSA.fasta.withGaps.html2015-04-17 16:05 1.6MFull MSA before JPred filters in FASTA
[ ]jp_TvzYb9X.hmm2015-04-17 16:04 38KHHMer2 profile of the alignment
[TXT]jp_TvzYb9X.html2015-04-17 16:04 88KHTML prediction and alignment data
[ ]jp_TvzYb9X.input2015-04-17 15:48 209 Raw input data for analysis
[ ]jp_TvzYb9X.jalview2015-04-17 16:04 4.8KJalview annotation file for alignment
[ ]jp_TvzYb9X.jnet2015-04-17 16:04 7.4KJnet secondary structure output
[TXT]jp_TvzYb9X.profile2015-04-17 16:03 32KPSIBLAST profile from alignment
[ ]jp_TvzYb9X.pssm2015-04-17 16:04 43KPSIBLAST PSSM for Jnet
[TXT]jp_TvzYb9X.results.html2016-02-15 12:21 90KJPred results page
[TXT]jp_TvzYb9X.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_TvzYb9X.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_TvzYb9X.seq2015-04-17 15:48 217 Sequence data file
[TXT]jp_TvzYb9X.simple.html2015-04-17 16:04 1.6KBrief HTML: sequence and prediction only
[TXT]jp_TvzYb9X.svg.html2015-04-17 16:05 82KJalview SVG summary of results
[ ]jp_TvzYb9X.tar.gz2015-04-17 16:05 691KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.