JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:51 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3kxsa_.name2015-04-17 19:16 0 Job name flag file
[ ]jp_hZoOz9M.align2015-04-17 21:51 5.4KPSIBLAST alignment in FASTA format
[TXT]jp_hZoOz9M.als2015-04-17 21:51 2.2KAlscript command file for PS/PDF output
[ ]jp_hZoOz9M.blast.gz2015-04-17 21:51 38KCompressed PSIBLAST output file
[TXT]jp_hZoOz9M.coils.csv2015-04-17 21:51 870 COILS output in CSV format
[ ]jp_hZoOz9M.coilseq.lupas_142015-04-17 21:51 5.9KCOILS output, window length 14
[ ]jp_hZoOz9M.coilseq.lupas_212015-04-17 21:51 5.9KCOILS output, window length 21
[ ]jp_hZoOz9M.coilseq.lupas_282015-04-17 21:51 5.9KCOILS output, window length 28
[ ]jp_hZoOz9M.concise2015-04-17 21:51 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_hZoOz9M.concise.blc2015-04-17 21:51 7.5KBLC format prediction and alignment data
[ ]jp_hZoOz9M.concise.fasta2015-04-17 21:51 6.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_hZoOz9M.concise.pdf2015-04-17 21:51 80KPDF prediction and alignment data
[ ]jp_hZoOz9M.concise.ps2015-04-17 21:51 1.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_hZoOz9M.fasta2015-04-17 21:43 154 Input query sequence in FASTA format
[ ]jp_hZoOz9M.full_MSA.fasta2015-04-17 21:51 46KFull MSA before JPred filters in FASTA
[TXT]jp_hZoOz9M.full_MSA.fasta.noGaps.html2015-04-17 21:51 76KFull MSA before JPred filters in FASTA
[TXT]jp_hZoOz9M.full_MSA.fasta.withGaps.html2015-04-17 21:51 98KFull MSA before JPred filters in FASTA
[ ]jp_hZoOz9M.hmm2015-04-17 21:51 26KHHMer2 profile of the alignment
[TXT]jp_hZoOz9M.html2015-04-17 21:51 25KHTML prediction and alignment data
[ ]jp_hZoOz9M.input2015-04-17 19:16 147 Raw input data for analysis
[ ]jp_hZoOz9M.jalview2015-04-17 21:51 3.6KJalview annotation file for alignment
[ ]jp_hZoOz9M.jnet2015-04-17 21:51 5.2KJnet secondary structure output
[TXT]jp_hZoOz9M.profile2015-04-17 21:49 23KPSIBLAST profile from alignment
[ ]jp_hZoOz9M.pssm2015-04-17 21:51 30KPSIBLAST PSSM for Jnet
[TXT]jp_hZoOz9M.results.html2016-02-15 12:21 67KJPred results page
[TXT]jp_hZoOz9M.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_hZoOz9M.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_hZoOz9M.seq2015-04-17 19:16 154 Sequence data file
[TXT]jp_hZoOz9M.simple.html2015-04-17 21:51 1.3KBrief HTML: sequence and prediction only
[TXT]jp_hZoOz9M.svg.html2015-04-17 21:51 58KJalview SVG summary of results
[ ]jp_hZoOz9M.tar.gz2015-04-17 21:51 166KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.