JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:07 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3mzfa2.name2015-04-17 15:49 0 Job name flag file
[ ]jp_6xoi3RJ.align2015-04-17 16:07 122KPSIBLAST alignment in FASTA format
[TXT]jp_6xoi3RJ.als2015-04-17 16:07 2.4KAlscript command file for PS/PDF output
[ ]jp_6xoi3RJ.blast.gz2015-04-17 16:06 920KCompressed PSIBLAST output file
[TXT]jp_6xoi3RJ.coils.csv2015-04-17 16:07 600 COILS output in CSV format
[ ]jp_6xoi3RJ.coilseq.lupas_142015-04-17 16:07 4.0KCOILS output, window length 14
[ ]jp_6xoi3RJ.coilseq.lupas_212015-04-17 16:07 4.0KCOILS output, window length 21
[ ]jp_6xoi3RJ.coilseq.lupas_282015-04-17 16:07 4.0KCOILS output, window length 28
[ ]jp_6xoi3RJ.concise2015-04-17 16:07 233KPrediction: coiled-coil, solvent, alignment
[ ]jp_6xoi3RJ.concise.blc2015-04-17 16:07 121KBLC format prediction and alignment data
[ ]jp_6xoi3RJ.concise.fasta2015-04-17 16:07 123KPrediction: coiled-coil, solvent, alignment
[ ]jp_6xoi3RJ.concise.pdf2015-04-17 16:07 838KPDF prediction and alignment data
[ ]jp_6xoi3RJ.concise.ps2015-04-17 16:07 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_6xoi3RJ.fasta2015-04-17 16:04 109 Input query sequence in FASTA format
[ ]jp_6xoi3RJ.full_MSA.fasta2015-04-17 16:07 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_6xoi3RJ.full_MSA.fasta.noGaps.html2015-04-17 16:07 567KFull MSA before JPred filters in FASTA
[TXT]jp_6xoi3RJ.full_MSA.fasta.withGaps.html2015-04-17 16:07 7.0MFull MSA before JPred filters in FASTA
[ ]jp_6xoi3RJ.hmm2015-04-17 16:07 18KHHMer2 profile of the alignment
[TXT]jp_6xoi3RJ.html2015-04-17 16:07 337KHTML prediction and alignment data
[ ]jp_6xoi3RJ.input2015-04-17 15:49 102 Raw input data for analysis
[ ]jp_6xoi3RJ.jalview2015-04-17 16:07 2.7KJalview annotation file for alignment
[ ]jp_6xoi3RJ.jnet2015-04-17 16:07 3.5KJnet secondary structure output
[TXT]jp_6xoi3RJ.profile2015-04-17 16:06 16KPSIBLAST profile from alignment
[ ]jp_6xoi3RJ.pssm2015-04-17 16:07 20KPSIBLAST PSSM for Jnet
[TXT]jp_6xoi3RJ.results.html2016-02-15 12:21 47KJPred results page
[TXT]jp_6xoi3RJ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_6xoi3RJ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_6xoi3RJ.seq2015-04-17 15:49 109 Sequence data file
[TXT]jp_6xoi3RJ.simple.html2015-04-17 16:07 1.2KBrief HTML: sequence and prediction only
[TXT]jp_6xoi3RJ.svg.html2015-04-17 16:07 39KJalview SVG summary of results
[ ]jp_6xoi3RJ.tar.gz2015-04-17 16:07 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.