JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:15 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3pbta1.name2015-04-17 18:17 0 Job name flag file
[ ]jp_Aqk8m2o.align2015-04-17 20:14 172KPSIBLAST alignment in FASTA format
[TXT]jp_Aqk8m2o.als2015-04-17 20:14 3.4KAlscript command file for PS/PDF output
[ ]jp_Aqk8m2o.blast.gz2015-04-17 20:13 11MCompressed PSIBLAST output file
[TXT]jp_Aqk8m2o.coils.csv2015-04-17 20:14 1.0KCOILS output in CSV format
[ ]jp_Aqk8m2o.coilseq.lupas_142015-04-17 20:14 7.1KCOILS output, window length 14
[ ]jp_Aqk8m2o.coilseq.lupas_212015-04-17 20:14 7.1KCOILS output, window length 21
[ ]jp_Aqk8m2o.coilseq.lupas_282015-04-17 20:14 7.1KCOILS output, window length 28
[ ]jp_Aqk8m2o.concise2015-04-17 20:14 336KPrediction: coiled-coil, solvent, alignment
[ ]jp_Aqk8m2o.concise.blc2015-04-17 20:14 172KBLC format prediction and alignment data
[ ]jp_Aqk8m2o.concise.fasta2015-04-17 20:14 173KPrediction: coiled-coil, solvent, alignment
[ ]jp_Aqk8m2o.concise.pdf2015-04-17 20:15 1.2MPDF prediction and alignment data
[ ]jp_Aqk8m2o.concise.ps2015-04-17 20:14 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_Aqk8m2o.fasta2015-04-17 20:05 184 Input query sequence in FASTA format
[ ]jp_Aqk8m2o.full_MSA.fasta2015-04-17 20:13 23MFull MSA before JPred filters in FASTA
[TXT]jp_Aqk8m2o.full_MSA.fasta.noGaps.html2015-04-17 20:15 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_Aqk8m2o.full_MSA.fasta.withGaps.html2015-04-17 20:15 49MFull MSA before JPred filters in FASTA
[ ]jp_Aqk8m2o.hmm2015-04-17 20:14 32KHHMer2 profile of the alignment
[TXT]jp_Aqk8m2o.html2015-04-17 20:14 361KHTML prediction and alignment data
[ ]jp_Aqk8m2o.input2015-04-17 18:17 176 Raw input data for analysis
[ ]jp_Aqk8m2o.jalview2015-04-17 20:14 4.2KJalview annotation file for alignment
[ ]jp_Aqk8m2o.jnet2015-04-17 20:14 6.2KJnet secondary structure output
[TXT]jp_Aqk8m2o.profile2015-04-17 20:11 27KPSIBLAST profile from alignment
[ ]jp_Aqk8m2o.pssm2015-04-17 20:14 36KPSIBLAST PSSM for Jnet
[TXT]jp_Aqk8m2o.results.html2016-02-15 12:21 79KJPred results page
[TXT]jp_Aqk8m2o.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Aqk8m2o.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Aqk8m2o.seq2015-04-17 18:17 184 Sequence data file
[TXT]jp_Aqk8m2o.simple.html2015-04-17 20:14 1.6KBrief HTML: sequence and prediction only
[TXT]jp_Aqk8m2o.svg.html2015-04-17 20:15 71KJalview SVG summary of results
[ ]jp_Aqk8m2o.tar.gz2015-04-17 20:15 18MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.