JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:08 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3pc7a_.name2015-04-17 17:04 0 Job name flag file
[ ]jp_SP5aCsw.align2015-04-17 18:07 54KPSIBLAST alignment in FASTA format
[TXT]jp_SP5aCsw.als2015-04-17 18:07 2.1KAlscript command file for PS/PDF output
[ ]jp_SP5aCsw.blast.gz2015-04-17 18:07 207KCompressed PSIBLAST output file
[TXT]jp_SP5aCsw.coils.csv2015-04-17 18:07 516 COILS output in CSV format
[ ]jp_SP5aCsw.coilseq.lupas_142015-04-17 18:07 3.4KCOILS output, window length 14
[ ]jp_SP5aCsw.coilseq.lupas_212015-04-17 18:07 3.4KCOILS output, window length 21
[ ]jp_SP5aCsw.coilseq.lupas_282015-04-17 18:07 3.4KCOILS output, window length 28
[ ]jp_SP5aCsw.concise2015-04-17 18:07 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_SP5aCsw.concise.blc2015-04-17 18:07 54KBLC format prediction and alignment data
[ ]jp_SP5aCsw.concise.fasta2015-04-17 18:07 55KPrediction: coiled-coil, solvent, alignment
[ ]jp_SP5aCsw.concise.pdf2015-04-17 18:07 348KPDF prediction and alignment data
[ ]jp_SP5aCsw.concise.ps2015-04-17 18:07 5.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_SP5aCsw.fasta2015-04-17 18:04 95 Input query sequence in FASTA format
[ ]jp_SP5aCsw.full_MSA.fasta2015-04-17 18:07 724KFull MSA before JPred filters in FASTA
[TXT]jp_SP5aCsw.full_MSA.fasta.noGaps.html2015-04-17 18:07 224KFull MSA before JPred filters in FASTA
[TXT]jp_SP5aCsw.full_MSA.fasta.withGaps.html2015-04-17 18:07 2.4MFull MSA before JPred filters in FASTA
[ ]jp_SP5aCsw.hmm2015-04-17 18:07 15KHHMer2 profile of the alignment
[TXT]jp_SP5aCsw.html2015-04-17 18:07 166KHTML prediction and alignment data
[ ]jp_SP5aCsw.input2015-04-17 17:04 88 Raw input data for analysis
[ ]jp_SP5aCsw.jalview2015-04-17 18:07 2.4KJalview annotation file for alignment
[ ]jp_SP5aCsw.jnet2015-04-17 18:07 3.0KJnet secondary structure output
[TXT]jp_SP5aCsw.profile2015-04-17 18:06 13KPSIBLAST profile from alignment
[ ]jp_SP5aCsw.pssm2015-04-17 18:07 17KPSIBLAST PSSM for Jnet
[TXT]jp_SP5aCsw.results.html2016-02-15 12:21 43KJPred results page
[TXT]jp_SP5aCsw.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_SP5aCsw.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_SP5aCsw.seq2015-04-17 17:04 95 Sequence data file
[TXT]jp_SP5aCsw.simple.html2015-04-17 18:07 1.2KBrief HTML: sequence and prediction only
[TXT]jp_SP5aCsw.svg.html2015-04-17 18:08 35KJalview SVG summary of results
[ ]jp_SP5aCsw.tar.gz2015-04-17 18:08 873KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.