A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 16:06 | 4.7K | JPred server log file |
| README | 2016-02-15 12:21 | 2.1K | Results file descriptions |
| d3proc1.name | 2015-04-17 15:50 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_VPKnyv5.align | 2015-04-17 16:06 | 29K | PSIBLAST alignment in FASTA format |
| jp_VPKnyv5.als | 2015-04-17 16:06 | 2.1K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_VPKnyv5.blast.gz | 2015-04-17 16:06 | 46K | Compressed PSIBLAST output file |
| jp_VPKnyv5.coils.csv | 2015-04-17 16:06 | 510 | COILS output in CSV format |
| jp_VPKnyv5.coilseq.lupas_14 | 2015-04-17 16:06 | 3.4K | COILS output, window length 14 |
| jp_VPKnyv5.coilseq.lupas_21 | 2015-04-17 16:06 | 3.4K | COILS output, window length 21 |
| jp_VPKnyv5.coilseq.lupas_28 | 2015-04-17 16:06 | 3.4K | COILS output, window length 28 |
| jp_VPKnyv5.concise | 2015-04-17 16:06 | 57K | Prediction: coiled-coil, solvent, alignment |
| jp_VPKnyv5.concise.blc | 2015-04-17 16:06 | 30K | BLC format prediction and alignment data |
| jp_VPKnyv5.concise.fasta | 2015-04-17 16:06 | 30K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_VPKnyv5.concise.pdf | 2015-04-17 16:06 | 171K | PDF prediction and alignment data |
| jp_VPKnyv5.concise.ps | 2015-04-17 16:06 | 3.1M | Prediction: coiled-coil, solvent, alignment |
| jp_VPKnyv5.fasta | 2015-04-17 16:04 | 94 | Input query sequence in FASTA format |
| jp_VPKnyv5.full_MSA.fasta | 2015-04-17 16:06 | 57K | Full MSA before JPred filters in FASTA |
| jp_VPKnyv5.full_MSA.fasta.noGaps.html | 2015-04-17 16:06 | 75K | Full MSA before JPred filters in FASTA |
| jp_VPKnyv5.full_MSA.fasta.withGaps.html | 2015-04-17 16:06 | 286K | Full MSA before JPred filters in FASTA |
| jp_VPKnyv5.hmm | 2015-04-17 16:06 | 15K | HHMer2 profile of the alignment |
| jp_VPKnyv5.html | 2015-04-17 16:06 | 94K | HTML prediction and alignment data |
| jp_VPKnyv5.input | 2015-04-17 15:50 | 87 | Raw input data for analysis |
| jp_VPKnyv5.jalview | 2015-04-17 16:06 | 2.4K | Jalview annotation file for alignment |
| jp_VPKnyv5.jnet | 2015-04-17 16:06 | 3.0K | Jnet secondary structure output |
| jp_VPKnyv5.profile | 2015-04-17 16:05 | 13K | PSIBLAST profile from alignment |
| jp_VPKnyv5.pssm | 2015-04-17 16:06 | 17K | PSIBLAST PSSM for Jnet |
| jp_VPKnyv5.results.html | 2016-02-15 12:21 | 43K | JPred results page |
| jp_VPKnyv5.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_VPKnyv5.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_VPKnyv5.seq | 2015-04-17 15:50 | 94 | Sequence data file |
| jp_VPKnyv5.simple.html | 2015-04-17 16:06 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_VPKnyv5.svg.html) | jp_VPKnyv5.svg.html | 2015-04-17 16:06 | 35K | Jalview SVG summary of results |
| jp_VPKnyv5.tar.gz | 2015-04-17 16:06 | 321K | Archive containing complete results |
