JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:16 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3qpaa_.name2015-04-17 19:31 0 Job name flag file
[ ]jp_GrVegvU.align2015-04-17 22:16 255KPSIBLAST alignment in FASTA format
[TXT]jp_GrVegvU.als2015-04-17 22:16 2.7KAlscript command file for PS/PDF output
[ ]jp_GrVegvU.blast.gz2015-04-17 22:14 1.8MCompressed PSIBLAST output file
[TXT]jp_GrVegvU.coils.csv2015-04-17 22:16 1.2KCOILS output in CSV format
[ ]jp_GrVegvU.coilseq.lupas_142015-04-17 22:16 8.3KCOILS output, window length 14
[ ]jp_GrVegvU.coilseq.lupas_212015-04-17 22:16 8.3KCOILS output, window length 21
[ ]jp_GrVegvU.coilseq.lupas_282015-04-17 22:16 8.3KCOILS output, window length 28
[ ]jp_GrVegvU.concise2015-04-17 22:16 501KPrediction: coiled-coil, solvent, alignment
[ ]jp_GrVegvU.concise.blc2015-04-17 22:16 254KBLC format prediction and alignment data
[ ]jp_GrVegvU.concise.fasta2015-04-17 22:16 257KPrediction: coiled-coil, solvent, alignment
[ ]jp_GrVegvU.concise.pdf2015-04-17 22:16 1.6MPDF prediction and alignment data
[ ]jp_GrVegvU.concise.ps2015-04-17 22:16 30MPrediction: coiled-coil, solvent, alignment
[ ]jp_GrVegvU.fasta2015-04-17 22:12 212 Input query sequence in FASTA format
[ ]jp_GrVegvU.full_MSA.fasta2015-04-17 22:14 4.1MFull MSA before JPred filters in FASTA
[TXT]jp_GrVegvU.full_MSA.fasta.noGaps.html2015-04-17 22:16 513KFull MSA before JPred filters in FASTA
[TXT]jp_GrVegvU.full_MSA.fasta.withGaps.html2015-04-17 22:16 10MFull MSA before JPred filters in FASTA
[ ]jp_GrVegvU.hmm2015-04-17 22:16 37KHHMer2 profile of the alignment
[TXT]jp_GrVegvU.html2015-04-17 22:16 503KHTML prediction and alignment data
[ ]jp_GrVegvU.input2015-04-17 19:31 204 Raw input data for analysis
[ ]jp_GrVegvU.jalview2015-04-17 22:16 4.7KJalview annotation file for alignment
[ ]jp_GrVegvU.jnet2015-04-17 22:16 7.2KJnet secondary structure output
[TXT]jp_GrVegvU.profile2015-04-17 22:13 32KPSIBLAST profile from alignment
[ ]jp_GrVegvU.pssm2015-04-17 22:16 42KPSIBLAST PSSM for Jnet
[TXT]jp_GrVegvU.results.html2016-02-15 12:21 86KJPred results page
[TXT]jp_GrVegvU.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_GrVegvU.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_GrVegvU.seq2015-04-17 19:31 212 Sequence data file
[TXT]jp_GrVegvU.simple.html2015-04-17 22:16 1.5KBrief HTML: sequence and prediction only
[TXT]jp_GrVegvU.svg.html2015-04-17 22:16 77KJalview SVG summary of results
[ ]jp_GrVegvU.tar.gz2015-04-17 22:16 4.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.