JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:08 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3qq8a2.name2015-04-17 17:04 0 Job name flag file
[ ]jp_Ss0m7rQ.align2015-04-17 18:08 12KPSIBLAST alignment in FASTA format
[TXT]jp_Ss0m7rQ.als2015-04-17 18:08 2.2KAlscript command file for PS/PDF output
[ ]jp_Ss0m7rQ.blast.gz2015-04-17 18:08 93KCompressed PSIBLAST output file
[TXT]jp_Ss0m7rQ.coils.csv2015-04-17 18:08 510 COILS output in CSV format
[ ]jp_Ss0m7rQ.coilseq.lupas_142015-04-17 18:08 3.4KCOILS output, window length 14
[ ]jp_Ss0m7rQ.coilseq.lupas_212015-04-17 18:08 3.4KCOILS output, window length 21
[ ]jp_Ss0m7rQ.coilseq.lupas_282015-04-17 18:08 3.4KCOILS output, window length 28
[ ]jp_Ss0m7rQ.concise2015-04-17 18:08 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ss0m7rQ.concise.blc2015-04-17 18:08 13KBLC format prediction and alignment data
[ ]jp_Ss0m7rQ.concise.fasta2015-04-17 18:08 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ss0m7rQ.concise.pdf2015-04-17 18:08 85KPDF prediction and alignment data
[ ]jp_Ss0m7rQ.concise.ps2015-04-17 18:08 1.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_Ss0m7rQ.fasta2015-04-17 18:05 94 Input query sequence in FASTA format
[ ]jp_Ss0m7rQ.full_MSA.fasta2015-04-17 18:08 130KFull MSA before JPred filters in FASTA
[TXT]jp_Ss0m7rQ.full_MSA.fasta.noGaps.html2015-04-17 18:08 76KFull MSA before JPred filters in FASTA
[TXT]jp_Ss0m7rQ.full_MSA.fasta.withGaps.html2015-04-17 18:08 530KFull MSA before JPred filters in FASTA
[ ]jp_Ss0m7rQ.hmm2015-04-17 18:08 15KHHMer2 profile of the alignment
[TXT]jp_Ss0m7rQ.html2015-04-17 18:08 44KHTML prediction and alignment data
[ ]jp_Ss0m7rQ.input2015-04-17 17:04 87 Raw input data for analysis
[ ]jp_Ss0m7rQ.jalview2015-04-17 18:08 2.4KJalview annotation file for alignment
[ ]jp_Ss0m7rQ.jnet2015-04-17 18:08 3.0KJnet secondary structure output
[TXT]jp_Ss0m7rQ.profile2015-04-17 18:07 13KPSIBLAST profile from alignment
[ ]jp_Ss0m7rQ.pssm2015-04-17 18:08 17KPSIBLAST PSSM for Jnet
[TXT]jp_Ss0m7rQ.results.html2016-02-15 12:21 43KJPred results page
[TXT]jp_Ss0m7rQ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Ss0m7rQ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Ss0m7rQ.seq2015-04-17 17:04 94 Sequence data file
[TXT]jp_Ss0m7rQ.simple.html2015-04-17 18:08 1.2KBrief HTML: sequence and prediction only
[TXT]jp_Ss0m7rQ.svg.html2015-04-17 18:08 34KJalview SVG summary of results
[ ]jp_Ss0m7rQ.tar.gz2015-04-17 18:08 261KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.