JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:35 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3rjsa_.name2015-04-17 15:50 0 Job name flag file
[ ]jp_zDfaeBp.align2015-04-17 16:34 67KPSIBLAST alignment in FASTA format
[TXT]jp_zDfaeBp.als2015-04-17 16:34 2.2KAlscript command file for PS/PDF output
[ ]jp_zDfaeBp.blast.gz2015-04-17 16:34 449KCompressed PSIBLAST output file
[TXT]jp_zDfaeBp.coils.csv2015-04-17 16:34 552 COILS output in CSV format
[ ]jp_zDfaeBp.coilseq.lupas_142015-04-17 16:34 3.7KCOILS output, window length 14
[ ]jp_zDfaeBp.coilseq.lupas_212015-04-17 16:34 3.7KCOILS output, window length 21
[ ]jp_zDfaeBp.coilseq.lupas_282015-04-17 16:34 3.7KCOILS output, window length 28
[ ]jp_zDfaeBp.concise2015-04-17 16:34 130KPrediction: coiled-coil, solvent, alignment
[ ]jp_zDfaeBp.concise.blc2015-04-17 16:34 68KBLC format prediction and alignment data
[ ]jp_zDfaeBp.concise.fasta2015-04-17 16:34 68KPrediction: coiled-coil, solvent, alignment
[ ]jp_zDfaeBp.concise.pdf2015-04-17 16:34 407KPDF prediction and alignment data
[ ]jp_zDfaeBp.concise.ps2015-04-17 16:34 7.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_zDfaeBp.fasta2015-04-17 16:05 101 Input query sequence in FASTA format
[ ]jp_zDfaeBp.full_MSA.fasta2015-04-17 16:34 716KFull MSA before JPred filters in FASTA
[TXT]jp_zDfaeBp.full_MSA.fasta.noGaps.html2015-04-17 16:34 259KFull MSA before JPred filters in FASTA
[TXT]jp_zDfaeBp.full_MSA.fasta.withGaps.html2015-04-17 16:34 2.7MFull MSA before JPred filters in FASTA
[ ]jp_zDfaeBp.hmm2015-04-17 16:34 16KHHMer2 profile of the alignment
[TXT]jp_zDfaeBp.html2015-04-17 16:34 203KHTML prediction and alignment data
[ ]jp_zDfaeBp.input2015-04-17 15:50 94 Raw input data for analysis
[ ]jp_zDfaeBp.jalview2015-04-17 16:34 2.6KJalview annotation file for alignment
[ ]jp_zDfaeBp.jnet2015-04-17 16:34 3.3KJnet secondary structure output
[TXT]jp_zDfaeBp.profile2015-04-17 16:25 14KPSIBLAST profile from alignment
[ ]jp_zDfaeBp.pssm2015-04-17 16:34 19KPSIBLAST PSSM for Jnet
[TXT]jp_zDfaeBp.results.html2016-02-15 12:21 45KJPred results page
[TXT]jp_zDfaeBp.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_zDfaeBp.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_zDfaeBp.seq2015-04-17 15:50 101 Sequence data file
[TXT]jp_zDfaeBp.simple.html2015-04-17 16:34 1.2KBrief HTML: sequence and prediction only
[TXT]jp_zDfaeBp.svg.html2015-04-17 16:34 37KJalview SVG summary of results
[ ]jp_zDfaeBp.tar.gz2015-04-17 16:35 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.