JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:10 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ueja_.name2015-04-17 16:28 0 Job name flag file
[ ]jp_1ACBfcp.align2015-04-17 17:10 38KPSIBLAST alignment in FASTA format
[TXT]jp_1ACBfcp.als2015-04-17 17:10 2.0KAlscript command file for PS/PDF output
[ ]jp_1ACBfcp.blast.gz2015-04-17 17:09 1.9MCompressed PSIBLAST output file
[TXT]jp_1ACBfcp.coils.csv2015-04-17 17:10 420 COILS output in CSV format
[ ]jp_1ACBfcp.coilseq.lupas_142015-04-17 17:10 2.7KCOILS output, window length 14
[ ]jp_1ACBfcp.coilseq.lupas_212015-04-17 17:10 2.7KCOILS output, window length 21
[ ]jp_1ACBfcp.coilseq.lupas_282015-04-17 17:10 2.7KCOILS output, window length 28
[ ]jp_1ACBfcp.concise2015-04-17 17:10 73KPrediction: coiled-coil, solvent, alignment
[ ]jp_1ACBfcp.concise.blc2015-04-17 17:10 38KBLC format prediction and alignment data
[ ]jp_1ACBfcp.concise.fasta2015-04-17 17:10 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_1ACBfcp.concise.pdf2015-04-17 17:10 220KPDF prediction and alignment data
[ ]jp_1ACBfcp.concise.ps2015-04-17 17:10 3.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_1ACBfcp.fasta2015-04-17 17:01 78 Input query sequence in FASTA format
[ ]jp_1ACBfcp.full_MSA.fasta2015-04-17 17:09 3.6MFull MSA before JPred filters in FASTA
[TXT]jp_1ACBfcp.full_MSA.fasta.noGaps.html2015-04-17 17:10 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_1ACBfcp.full_MSA.fasta.withGaps.html2015-04-17 17:10 14MFull MSA before JPred filters in FASTA
[ ]jp_1ACBfcp.hmm2015-04-17 17:10 12KHHMer2 profile of the alignment
[TXT]jp_1ACBfcp.html2015-04-17 17:10 132KHTML prediction and alignment data
[ ]jp_1ACBfcp.input2015-04-17 16:28 72 Raw input data for analysis
[ ]jp_1ACBfcp.jalview2015-04-17 17:10 2.1KJalview annotation file for alignment
[ ]jp_1ACBfcp.jnet2015-04-17 17:10 2.5KJnet secondary structure output
[TXT]jp_1ACBfcp.profile2015-04-17 17:07 11KPSIBLAST profile from alignment
[ ]jp_1ACBfcp.pssm2015-04-17 17:10 14KPSIBLAST PSSM for Jnet
[TXT]jp_1ACBfcp.results.html2016-02-15 12:21 37KJPred results page
[TXT]jp_1ACBfcp.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1ACBfcp.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1ACBfcp.seq2015-04-17 16:28 78 Sequence data file
[TXT]jp_1ACBfcp.simple.html2015-04-17 17:10 1.1KBrief HTML: sequence and prediction only
[TXT]jp_1ACBfcp.svg.html2015-04-17 17:10 29KJalview SVG summary of results
[ ]jp_1ACBfcp.tar.gz2015-04-17 17:10 3.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.