JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:51 4.9KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4a82a1.name2015-04-17 19:32 0 Job name flag file
[ ]jp_eg1m4OC.align2015-04-17 22:50 305KPSIBLAST alignment in FASTA format
[TXT]jp_eg1m4OC.als2015-04-17 22:50 2.3KAlscript command file for PS/PDF output
[ ]jp_eg1m4OC.blast.gz2015-04-17 22:40 15MCompressed PSIBLAST output file
[TXT]jp_eg1m4OC.coils.csv2015-04-17 22:50 1.9KCOILS output in CSV format
[ ]jp_eg1m4OC.coilseq.lupas_142015-04-17 22:50 14KCOILS output, window length 14
[ ]jp_eg1m4OC.coilseq.lupas_212015-04-17 22:50 14KCOILS output, window length 21
[ ]jp_eg1m4OC.coilseq.lupas_282015-04-17 22:50 14KCOILS output, window length 28
[ ]jp_eg1m4OC.concise2015-04-17 22:50 606KPrediction: coiled-coil, solvent, alignment
[ ]jp_eg1m4OC.concise.blc2015-04-17 22:50 306KBLC format prediction and alignment data
[ ]jp_eg1m4OC.concise.fasta2015-04-17 22:50 308KPrediction: coiled-coil, solvent, alignment
[ ]jp_eg1m4OC.concise.pdf2015-04-17 22:50 2.2KPDF prediction and alignment data
[ ]jp_eg1m4OC.concise.ps2015-04-17 22:50 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_eg1m4OC.fasta2015-04-17 22:14 340 Input query sequence in FASTA format
[ ]jp_eg1m4OC.full_MSA.fasta2015-04-17 22:49 26MFull MSA before JPred filters in FASTA
[TXT]jp_eg1m4OC.full_MSA.fasta.noGaps.html2015-04-17 22:51 4.4MFull MSA before JPred filters in FASTA
[TXT]jp_eg1m4OC.full_MSA.fasta.withGaps.html2015-04-17 22:51 85MFull MSA before JPred filters in FASTA
[ ]jp_eg1m4OC.hmm2015-04-17 22:50 61KHHMer2 profile of the alignment
[TXT]jp_eg1m4OC.html2015-04-17 22:50 515KHTML prediction and alignment data
[ ]jp_eg1m4OC.input2015-04-17 19:32 330 Raw input data for analysis
[ ]jp_eg1m4OC.jalview2015-04-17 22:50 7.6KJalview annotation file for alignment
[ ]jp_eg1m4OC.jnet2015-04-17 22:50 12KJnet secondary structure output
[TXT]jp_eg1m4OC.profile2015-04-17 22:38 52KPSIBLAST profile from alignment
[ ]jp_eg1m4OC.pssm2015-04-17 22:50 69KPSIBLAST PSSM for Jnet
[TXT]jp_eg1m4OC.results.html2016-02-15 12:21 130KJPred results page
[TXT]jp_eg1m4OC.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_eg1m4OC.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_eg1m4OC.seq2015-04-17 19:32 340 Sequence data file
[TXT]jp_eg1m4OC.simple.html2015-04-17 22:50 1.6KBrief HTML: sequence and prediction only
[TXT]jp_eg1m4OC.svg.html2015-04-17 22:51 122KJalview SVG summary of results
[ ]jp_eg1m4OC.tar.gz2015-04-17 22:51 28MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.