JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:19 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4atma_.name2015-04-17 18:20 0 Job name flag file
[ ]jp_2OuEcF4.align2015-04-17 20:18 165KPSIBLAST alignment in FASTA format
[TXT]jp_2OuEcF4.als2015-04-17 20:18 2.0KAlscript command file for PS/PDF output
[ ]jp_2OuEcF4.blast.gz2015-04-17 20:16 1.4MCompressed PSIBLAST output file
[TXT]jp_2OuEcF4.coils.csv2015-04-17 20:18 1.3KCOILS output in CSV format
[ ]jp_2OuEcF4.coilseq.lupas_142015-04-17 20:18 9.3KCOILS output, window length 14
[ ]jp_2OuEcF4.coilseq.lupas_212015-04-17 20:18 9.3KCOILS output, window length 21
[ ]jp_2OuEcF4.coilseq.lupas_282015-04-17 20:18 9.3KCOILS output, window length 28
[ ]jp_2OuEcF4.concise2015-04-17 20:18 328KPrediction: coiled-coil, solvent, alignment
[ ]jp_2OuEcF4.concise.blc2015-04-17 20:18 166KBLC format prediction and alignment data
[ ]jp_2OuEcF4.concise.fasta2015-04-17 20:18 167KPrediction: coiled-coil, solvent, alignment
[ ]jp_2OuEcF4.concise.pdf2015-04-17 20:18 1.1MPDF prediction and alignment data
[ ]jp_2OuEcF4.concise.ps2015-04-17 20:18 20MPrediction: coiled-coil, solvent, alignment
[ ]jp_2OuEcF4.fasta2015-04-17 20:10 237 Input query sequence in FASTA format
[ ]jp_2OuEcF4.full_MSA.fasta2015-04-17 20:17 3.4MFull MSA before JPred filters in FASTA
[TXT]jp_2OuEcF4.full_MSA.fasta.noGaps.html2015-04-17 20:18 579KFull MSA before JPred filters in FASTA
[TXT]jp_2OuEcF4.full_MSA.fasta.withGaps.html2015-04-17 20:18 10MFull MSA before JPred filters in FASTA
[ ]jp_2OuEcF4.hmm2015-04-17 20:18 41KHHMer2 profile of the alignment
[TXT]jp_2OuEcF4.html2015-04-17 20:18 325KHTML prediction and alignment data
[ ]jp_2OuEcF4.input2015-04-17 18:20 228 Raw input data for analysis
[ ]jp_2OuEcF4.jalview2015-04-17 20:18 5.5KJalview annotation file for alignment
[ ]jp_2OuEcF4.jnet2015-04-17 20:18 8.1KJnet secondary structure output
[TXT]jp_2OuEcF4.profile2015-04-17 20:13 35KPSIBLAST profile from alignment
[ ]jp_2OuEcF4.pssm2015-04-17 20:18 47KPSIBLAST PSSM for Jnet
[TXT]jp_2OuEcF4.results.html2016-02-15 12:21 92KJPred results page
[TXT]jp_2OuEcF4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_2OuEcF4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_2OuEcF4.seq2015-04-17 18:20 237 Sequence data file
[TXT]jp_2OuEcF4.simple.html2015-04-17 20:18 1.4KBrief HTML: sequence and prediction only
[TXT]jp_2OuEcF4.svg.html2015-04-17 20:19 84KJalview SVG summary of results
[ ]jp_2OuEcF4.tar.gz2015-04-17 20:19 3.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.