JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:10 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4axoa_.name2015-04-17 18:56 0 Job name flag file
[ ]jp_NHE_D4p.align2015-04-17 21:10 96KPSIBLAST alignment in FASTA format
[TXT]jp_NHE_D4p.als2015-04-17 21:10 2.8KAlscript command file for PS/PDF output
[ ]jp_NHE_D4p.blast.gz2015-04-17 21:09 2.2MCompressed PSIBLAST output file
[TXT]jp_NHE_D4p.coils.csv2015-04-17 21:10 786 COILS output in CSV format
[ ]jp_NHE_D4p.coilseq.lupas_142015-04-17 21:10 5.3KCOILS output, window length 14
[ ]jp_NHE_D4p.coilseq.lupas_212015-04-17 21:10 5.3KCOILS output, window length 21
[ ]jp_NHE_D4p.coilseq.lupas_282015-04-17 21:10 5.3KCOILS output, window length 28
[ ]jp_NHE_D4p.concise2015-04-17 21:10 189KPrediction: coiled-coil, solvent, alignment
[ ]jp_NHE_D4p.concise.blc2015-04-17 21:10 97KBLC format prediction and alignment data
[ ]jp_NHE_D4p.concise.fasta2015-04-17 21:10 97KPrediction: coiled-coil, solvent, alignment
[ ]jp_NHE_D4p.concise.pdf2015-04-17 21:10 581KPDF prediction and alignment data
[ ]jp_NHE_D4p.concise.ps2015-04-17 21:10 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_NHE_D4p.fasta2015-04-17 21:04 140 Input query sequence in FASTA format
[ ]jp_NHE_D4p.full_MSA.fasta2015-04-17 21:10 9.3MFull MSA before JPred filters in FASTA
[TXT]jp_NHE_D4p.full_MSA.fasta.noGaps.html2015-04-17 21:10 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_NHE_D4p.full_MSA.fasta.withGaps.html2015-04-17 21:10 35MFull MSA before JPred filters in FASTA
[ ]jp_NHE_D4p.hmm2015-04-17 21:10 24KHHMer2 profile of the alignment
[TXT]jp_NHE_D4p.html2015-04-17 21:10 237KHTML prediction and alignment data
[ ]jp_NHE_D4p.input2015-04-17 18:56 133 Raw input data for analysis
[ ]jp_NHE_D4p.jalview2015-04-17 21:10 3.3KJalview annotation file for alignment
[ ]jp_NHE_D4p.jnet2015-04-17 21:10 4.7KJnet secondary structure output
[TXT]jp_NHE_D4p.profile2015-04-17 21:08 20KPSIBLAST profile from alignment
[ ]jp_NHE_D4p.pssm2015-04-17 21:10 27KPSIBLAST PSSM for Jnet
[TXT]jp_NHE_D4p.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_NHE_D4p.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_NHE_D4p.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_NHE_D4p.seq2015-04-17 18:56 140 Sequence data file
[TXT]jp_NHE_D4p.simple.html2015-04-17 21:10 1.4KBrief HTML: sequence and prediction only
[TXT]jp_NHE_D4p.svg.html2015-04-17 21:10 51KJalview SVG summary of results
[ ]jp_NHE_D4p.tar.gz2015-04-17 21:10 5.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.