JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:09 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4fw1a2.name2015-04-17 16:30 0 Job name flag file
[ ]jp_2q2wOUX.align2015-04-17 17:09 728 PSIBLAST alignment in FASTA format
[TXT]jp_2q2wOUX.als2015-04-17 17:09 1.7KAlscript command file for PS/PDF output
[ ]jp_2q2wOUX.blast.gz2015-04-17 17:09 2.7KCompressed PSIBLAST output file
[TXT]jp_2q2wOUX.coils.csv2015-04-17 17:09 348 COILS output in CSV format
[ ]jp_2q2wOUX.coilseq.lupas_142015-04-17 17:09 2.2KCOILS output, window length 14
[ ]jp_2q2wOUX.coilseq.lupas_212015-04-17 17:09 2.2KCOILS output, window length 21
[ ]jp_2q2wOUX.coilseq.lupas_282015-04-17 17:09 2.2KCOILS output, window length 28
[ ]jp_2q2wOUX.concise2015-04-17 17:09 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_2q2wOUX.concise.blc2015-04-17 17:09 1.6KBLC format prediction and alignment data
[ ]jp_2q2wOUX.concise.fasta2015-04-17 17:09 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_2q2wOUX.concise.pdf2015-04-17 17:09 10KPDF prediction and alignment data
[ ]jp_2q2wOUX.concise.ps2015-04-17 17:09 153KPrediction: coiled-coil, solvent, alignment
[ ]jp_2q2wOUX.fasta2015-04-17 17:05 66 Input query sequence in FASTA format
[ ]jp_2q2wOUX.full_MSA.fasta2015-04-17 17:09 1.3KFull MSA before JPred filters in FASTA
[TXT]jp_2q2wOUX.full_MSA.fasta.noGaps.html2015-04-17 17:09 3.2KFull MSA before JPred filters in FASTA
[TXT]jp_2q2wOUX.full_MSA.fasta.withGaps.html2015-04-17 17:09 4.1KFull MSA before JPred filters in FASTA
[ ]jp_2q2wOUX.hmm2015-04-17 17:09 9.9KHHMer2 profile of the alignment
[TXT]jp_2q2wOUX.html2015-04-17 17:09 8.7KHTML prediction and alignment data
[ ]jp_2q2wOUX.input2015-04-17 16:30 60 Raw input data for analysis
[ ]jp_2q2wOUX.jalview2015-04-17 17:09 1.9KJalview annotation file for alignment
[ ]jp_2q2wOUX.jnet2015-04-17 17:09 2.0KJnet secondary structure output
[TXT]jp_2q2wOUX.profile2015-04-17 17:08 8.9KPSIBLAST profile from alignment
[ ]jp_2q2wOUX.pssm2015-04-17 17:09 11KPSIBLAST PSSM for Jnet
[TXT]jp_2q2wOUX.results.html2016-02-15 12:21 31KJPred results page
[TXT]jp_2q2wOUX.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_2q2wOUX.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_2q2wOUX.seq2015-04-17 16:30 66 Sequence data file
[TXT]jp_2q2wOUX.simple.html2015-04-17 17:09 1.0KBrief HTML: sequence and prediction only
[TXT]jp_2q2wOUX.svg.html2015-04-17 17:09 23KJalview SVG summary of results
[ ]jp_2q2wOUX.tar.gz2015-04-17 17:09 31KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.