JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:20 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4fyxb2.name2015-04-17 19:34 0 Job name flag file
[ ]jp_5y7couq.align2015-04-17 22:20 24KPSIBLAST alignment in FASTA format
[TXT]jp_5y7couq.als2015-04-17 22:20 1.9KAlscript command file for PS/PDF output
[ ]jp_5y7couq.blast.gz2015-04-17 22:20 51KCompressed PSIBLAST output file
[TXT]jp_5y7couq.coils.csv2015-04-17 22:20 348 COILS output in CSV format
[ ]jp_5y7couq.coilseq.lupas_142015-04-17 22:20 2.2KCOILS output, window length 14
[ ]jp_5y7couq.coilseq.lupas_212015-04-17 22:20 2.2KCOILS output, window length 21
[ ]jp_5y7couq.coilseq.lupas_282015-04-17 22:20 2.2KCOILS output, window length 28
[ ]jp_5y7couq.concise2015-04-17 22:20 47KPrediction: coiled-coil, solvent, alignment
[ ]jp_5y7couq.concise.blc2015-04-17 22:20 25KBLC format prediction and alignment data
[ ]jp_5y7couq.concise.fasta2015-04-17 22:20 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_5y7couq.concise.pdf2015-04-17 22:20 138KPDF prediction and alignment data
[ ]jp_5y7couq.concise.ps2015-04-17 22:20 2.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_5y7couq.fasta2015-04-17 22:17 66 Input query sequence in FASTA format
[ ]jp_5y7couq.full_MSA.fasta2015-04-17 22:20 52KFull MSA before JPred filters in FASTA
[TXT]jp_5y7couq.full_MSA.fasta.noGaps.html2015-04-17 22:20 94KFull MSA before JPred filters in FASTA
[TXT]jp_5y7couq.full_MSA.fasta.withGaps.html2015-04-17 22:20 297KFull MSA before JPred filters in FASTA
[ ]jp_5y7couq.hmm2015-04-17 22:20 9.9KHHMer2 profile of the alignment
[TXT]jp_5y7couq.html2015-04-17 22:20 96KHTML prediction and alignment data
[ ]jp_5y7couq.input2015-04-17 19:34 60 Raw input data for analysis
[ ]jp_5y7couq.jalview2015-04-17 22:20 1.9KJalview annotation file for alignment
[ ]jp_5y7couq.jnet2015-04-17 22:20 2.0KJnet secondary structure output
[TXT]jp_5y7couq.profile2015-04-17 22:19 8.9KPSIBLAST profile from alignment
[ ]jp_5y7couq.pssm2015-04-17 22:20 11KPSIBLAST PSSM for Jnet
[TXT]jp_5y7couq.results.html2016-02-15 12:21 32KJPred results page
[TXT]jp_5y7couq.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_5y7couq.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_5y7couq.seq2015-04-17 19:34 66 Sequence data file
[TXT]jp_5y7couq.simple.html2015-04-17 22:20 1.1KBrief HTML: sequence and prediction only
[TXT]jp_5y7couq.svg.html2015-04-17 22:20 24KJalview SVG summary of results
[ ]jp_5y7couq.tar.gz2015-04-17 22:20 286KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.