JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:21 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4g78a_.name2015-04-17 16:30 0 Job name flag file
[ ]jp_tl6DCaX.align2015-04-17 17:20 169KPSIBLAST alignment in FASTA format
[TXT]jp_tl6DCaX.als2015-04-17 17:21 2.1KAlscript command file for PS/PDF output
[ ]jp_tl6DCaX.blast.gz2015-04-17 17:20 1.0MCompressed PSIBLAST output file
[TXT]jp_tl6DCaX.coils.csv2015-04-17 17:20 912 COILS output in CSV format
[ ]jp_tl6DCaX.coilseq.lupas_142015-04-17 17:20 6.2KCOILS output, window length 14
[ ]jp_tl6DCaX.coilseq.lupas_212015-04-17 17:20 6.2KCOILS output, window length 21
[ ]jp_tl6DCaX.coilseq.lupas_282015-04-17 17:20 6.2KCOILS output, window length 28
[ ]jp_tl6DCaX.concise2015-04-17 17:20 328KPrediction: coiled-coil, solvent, alignment
[ ]jp_tl6DCaX.concise.blc2015-04-17 17:21 168KBLC format prediction and alignment data
[ ]jp_tl6DCaX.concise.fasta2015-04-17 17:21 170KPrediction: coiled-coil, solvent, alignment
[ ]jp_tl6DCaX.concise.pdf2015-04-17 17:21 1.0MPDF prediction and alignment data
[ ]jp_tl6DCaX.concise.ps2015-04-17 17:21 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_tl6DCaX.fasta2015-04-17 17:06 162 Input query sequence in FASTA format
[ ]jp_tl6DCaX.full_MSA.fasta2015-04-17 17:20 2.4MFull MSA before JPred filters in FASTA
[TXT]jp_tl6DCaX.full_MSA.fasta.noGaps.html2015-04-17 17:21 640KFull MSA before JPred filters in FASTA
[TXT]jp_tl6DCaX.full_MSA.fasta.withGaps.html2015-04-17 17:21 9.0MFull MSA before JPred filters in FASTA
[ ]jp_tl6DCaX.hmm2015-04-17 17:20 28KHHMer2 profile of the alignment
[TXT]jp_tl6DCaX.html2015-04-17 17:20 384KHTML prediction and alignment data
[ ]jp_tl6DCaX.input2015-04-17 16:30 154 Raw input data for analysis
[ ]jp_tl6DCaX.jalview2015-04-17 17:21 3.9KJalview annotation file for alignment
[ ]jp_tl6DCaX.jnet2015-04-17 17:20 5.4KJnet secondary structure output
[TXT]jp_tl6DCaX.profile2015-04-17 17:15 24KPSIBLAST profile from alignment
[ ]jp_tl6DCaX.pssm2015-04-17 17:20 32KPSIBLAST PSSM for Jnet
[TXT]jp_tl6DCaX.results.html2016-02-15 12:21 67KJPred results page
[TXT]jp_tl6DCaX.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_tl6DCaX.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_tl6DCaX.seq2015-04-17 16:30 162 Sequence data file
[TXT]jp_tl6DCaX.simple.html2015-04-17 17:20 1.3KBrief HTML: sequence and prediction only
[TXT]jp_tl6DCaX.svg.html2015-04-17 17:21 59KJalview SVG summary of results
[ ]jp_tl6DCaX.tar.gz2015-04-17 17:21 3.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.