A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:18 | 4.7K | JPred server log file |
| README | 2016-02-15 12:21 | 2.1K | Results file descriptions |
| d4gwga2.name | 2015-04-17 18:20 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_3YFogVN.align | 2015-04-17 20:17 | 131K | PSIBLAST alignment in FASTA format |
| jp_3YFogVN.als | 2015-04-17 20:17 | 4.1K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_3YFogVN.blast.gz | 2015-04-17 20:16 | 3.7M | Compressed PSIBLAST output file |
| jp_3YFogVN.coils.csv | 2015-04-17 20:17 | 1.7K | COILS output in CSV format |
| jp_3YFogVN.coilseq.lupas_14 | 2015-04-17 20:17 | 12K | COILS output, window length 14 |
| jp_3YFogVN.coilseq.lupas_21 | 2015-04-17 20:17 | 12K | COILS output, window length 21 |
| jp_3YFogVN.coilseq.lupas_28 | 2015-04-17 20:17 | 12K | COILS output, window length 28 |
| jp_3YFogVN.concise | 2015-04-17 20:17 | 265K | Prediction: coiled-coil, solvent, alignment |
| jp_3YFogVN.concise.blc | 2015-04-17 20:17 | 133K | BLC format prediction and alignment data |
| jp_3YFogVN.concise.fasta | 2015-04-17 20:17 | 134K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_3YFogVN.concise.pdf | 2015-04-17 20:17 | 839K | PDF prediction and alignment data |
| jp_3YFogVN.concise.ps | 2015-04-17 20:17 | 16M | Prediction: coiled-coil, solvent, alignment |
| jp_3YFogVN.fasta | 2015-04-17 20:12 | 308 | Input query sequence in FASTA format |
| jp_3YFogVN.full_MSA.fasta | 2015-04-17 20:17 | 7.4M | Full MSA before JPred filters in FASTA |
| jp_3YFogVN.full_MSA.fasta.noGaps.html | 2015-04-17 20:17 | 1.8M | Full MSA before JPred filters in FASTA |
| jp_3YFogVN.full_MSA.fasta.withGaps.html | 2015-04-17 20:17 | 26M | Full MSA before JPred filters in FASTA |
| jp_3YFogVN.hmm | 2015-04-17 20:17 | 55K | HHMer2 profile of the alignment |
| jp_3YFogVN.html | 2015-04-17 20:17 | 243K | HTML prediction and alignment data |
| jp_3YFogVN.input | 2015-04-17 18:20 | 298 | Raw input data for analysis |
| jp_3YFogVN.jalview | 2015-04-17 20:17 | 6.8K | Jalview annotation file for alignment |
| jp_3YFogVN.jnet | 2015-04-17 20:17 | 11K | Jnet secondary structure output |
| jp_3YFogVN.profile | 2015-04-17 20:14 | 47K | PSIBLAST profile from alignment |
| jp_3YFogVN.pssm | 2015-04-17 20:17 | 63K | PSIBLAST PSSM for Jnet |
| jp_3YFogVN.results.html | 2016-02-15 12:21 | 127K | JPred results page |
| jp_3YFogVN.results_jalview.html | 2016-02-24 17:19 | 13K | Jalview results options |
| jp_3YFogVN.results_jalview_app.html | 2016-02-24 17:19 | 16K | HTML prediction and alignment data |
| jp_3YFogVN.seq | 2015-04-17 18:20 | 308 | Sequence data file |
| jp_3YFogVN.simple.html | 2015-04-17 20:17 | 1.9K | Brief HTML: sequence and prediction only |
![[TXT]](jp_3YFogVN.svg.html) | jp_3YFogVN.svg.html | 2015-04-17 20:18 | 119K | Jalview SVG summary of results |
| jp_3YFogVN.tar.gz | 2015-04-17 20:18 | 7.1M | Archive containing complete results |
