JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:14 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4hy4a_.name2015-04-17 17:08 0 Job name flag file
[ ]jp_lyRAszr.align2015-04-17 18:13 86KPSIBLAST alignment in FASTA format
[TXT]jp_lyRAszr.als2015-04-17 18:13 2.2KAlscript command file for PS/PDF output
[ ]jp_lyRAszr.blast.gz2015-04-17 18:13 972KCompressed PSIBLAST output file
[TXT]jp_lyRAszr.coils.csv2015-04-17 18:13 582 COILS output in CSV format
[ ]jp_lyRAszr.coilseq.lupas_142015-04-17 18:13 3.9KCOILS output, window length 14
[ ]jp_lyRAszr.coilseq.lupas_212015-04-17 18:13 3.9KCOILS output, window length 21
[ ]jp_lyRAszr.coilseq.lupas_282015-04-17 18:13 3.9KCOILS output, window length 28
[ ]jp_lyRAszr.concise2015-04-17 18:13 166KPrediction: coiled-coil, solvent, alignment
[ ]jp_lyRAszr.concise.blc2015-04-17 18:13 86KBLC format prediction and alignment data
[ ]jp_lyRAszr.concise.fasta2015-04-17 18:13 87KPrediction: coiled-coil, solvent, alignment
[ ]jp_lyRAszr.concise.pdf2015-04-17 18:14 484KPDF prediction and alignment data
[ ]jp_lyRAszr.concise.ps2015-04-17 18:13 9.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_lyRAszr.fasta2015-04-17 18:11 106 Input query sequence in FASTA format
[ ]jp_lyRAszr.full_MSA.fasta2015-04-17 18:13 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_lyRAszr.full_MSA.fasta.noGaps.html2015-04-17 18:14 589KFull MSA before JPred filters in FASTA
[TXT]jp_lyRAszr.full_MSA.fasta.withGaps.html2015-04-17 18:14 6.5MFull MSA before JPred filters in FASTA
[ ]jp_lyRAszr.hmm2015-04-17 18:13 17KHHMer2 profile of the alignment
[TXT]jp_lyRAszr.html2015-04-17 18:13 247KHTML prediction and alignment data
[ ]jp_lyRAszr.input2015-04-17 17:08 99 Raw input data for analysis
[ ]jp_lyRAszr.jalview2015-04-17 18:13 2.7KJalview annotation file for alignment
[ ]jp_lyRAszr.jnet2015-04-17 18:13 3.4KJnet secondary structure output
[TXT]jp_lyRAszr.profile2015-04-17 18:12 15KPSIBLAST profile from alignment
[ ]jp_lyRAszr.pssm2015-04-17 18:13 20KPSIBLAST PSSM for Jnet
[TXT]jp_lyRAszr.results.html2016-02-15 12:21 48KJPred results page
[TXT]jp_lyRAszr.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_lyRAszr.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_lyRAszr.seq2015-04-17 17:08 106 Sequence data file
[TXT]jp_lyRAszr.simple.html2015-04-17 18:13 1.2KBrief HTML: sequence and prediction only
[TXT]jp_lyRAszr.svg.html2015-04-17 18:14 40KJalview SVG summary of results
[ ]jp_lyRAszr.tar.gz2015-04-17 18:14 2.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.