JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:42 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4jw0a_.name2015-04-17 19:49 0 Job name flag file
[ ]jp_ffAA4pw.align2015-04-17 22:41 51KPSIBLAST alignment in FASTA format
[TXT]jp_ffAA4pw.als2015-04-17 22:41 2.2KAlscript command file for PS/PDF output
[ ]jp_ffAA4pw.blast.gz2015-04-17 22:41 168KCompressed PSIBLAST output file
[TXT]jp_ffAA4pw.coils.csv2015-04-17 22:41 600 COILS output in CSV format
[ ]jp_ffAA4pw.coilseq.lupas_142015-04-17 22:41 4.0KCOILS output, window length 14
[ ]jp_ffAA4pw.coilseq.lupas_212015-04-17 22:41 4.0KCOILS output, window length 21
[ ]jp_ffAA4pw.coilseq.lupas_282015-04-17 22:41 4.0KCOILS output, window length 28
[ ]jp_ffAA4pw.concise2015-04-17 22:41 100KPrediction: coiled-coil, solvent, alignment
[ ]jp_ffAA4pw.concise.blc2015-04-17 22:41 51KBLC format prediction and alignment data
[ ]jp_ffAA4pw.concise.fasta2015-04-17 22:41 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_ffAA4pw.concise.pdf2015-04-17 22:42 326KPDF prediction and alignment data
[ ]jp_ffAA4pw.concise.ps2015-04-17 22:41 5.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_ffAA4pw.fasta2015-04-17 22:23 109 Input query sequence in FASTA format
[ ]jp_ffAA4pw.full_MSA.fasta2015-04-17 22:41 194KFull MSA before JPred filters in FASTA
[TXT]jp_ffAA4pw.full_MSA.fasta.noGaps.html2015-04-17 22:42 153KFull MSA before JPred filters in FASTA
[TXT]jp_ffAA4pw.full_MSA.fasta.withGaps.html2015-04-17 22:42 849KFull MSA before JPred filters in FASTA
[ ]jp_ffAA4pw.hmm2015-04-17 22:41 18KHHMer2 profile of the alignment
[TXT]jp_ffAA4pw.html2015-04-17 22:41 148KHTML prediction and alignment data
[ ]jp_ffAA4pw.input2015-04-17 19:49 102 Raw input data for analysis
[ ]jp_ffAA4pw.jalview2015-04-17 22:41 2.7KJalview annotation file for alignment
[ ]jp_ffAA4pw.jnet2015-04-17 22:41 3.5KJnet secondary structure output
[TXT]jp_ffAA4pw.profile2015-04-17 22:40 16KPSIBLAST profile from alignment
[ ]jp_ffAA4pw.pssm2015-04-17 22:41 20KPSIBLAST PSSM for Jnet
[TXT]jp_ffAA4pw.results.html2016-02-15 12:21 47KJPred results page
[TXT]jp_ffAA4pw.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_ffAA4pw.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_ffAA4pw.seq2015-04-17 19:49 109 Sequence data file
[TXT]jp_ffAA4pw.simple.html2015-04-17 22:41 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ffAA4pw.svg.html2015-04-17 22:42 39KJalview SVG summary of results
[ ]jp_ffAA4pw.tar.gz2015-04-17 22:42 694KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.