JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-21 10:51 4.7KJPred server log file
[TXT]README2016-02-15 12:22 2.1KResults file descriptions
[TXT]e1mtp_________1B.name2015-04-21 10:39 0 Job name flag file
[ ]jp_53DqY25.align2015-04-21 10:50 576 PSIBLAST alignment in FASTA format
[TXT]jp_53DqY25.als2015-04-21 10:50 1.6KAlscript command file for PS/PDF output
[ ]jp_53DqY25.blast.gz2015-04-21 10:50 2.8KCompressed PSIBLAST output file
[TXT]jp_53DqY25.coils.csv2015-04-21 10:50 240 COILS output in CSV format
[ ]jp_53DqY25.coilseq.lupas_142015-04-21 10:50 1.5KCOILS output, window length 14
[ ]jp_53DqY25.coilseq.lupas_212015-04-21 10:50 1.5KCOILS output, window length 21
[ ]jp_53DqY25.coilseq.lupas_282015-04-21 10:50 1.5KCOILS output, window length 28
[ ]jp_53DqY25.concise2015-04-21 10:50 2.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_53DqY25.concise.blc2015-04-21 10:50 1.2KBLC format prediction and alignment data
[ ]jp_53DqY25.concise.fasta2015-04-21 10:50 1.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_53DqY25.concise.pdf2015-04-21 10:50 7.8KPDF prediction and alignment data
[ ]jp_53DqY25.concise.ps2015-04-21 10:50 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_53DqY25.fasta2015-04-21 10:39 48 Input query sequence in FASTA format
[ ]jp_53DqY25.full_MSA.fasta2015-04-21 10:50 1.5KFull MSA before JPred filters in FASTA
[TXT]jp_53DqY25.full_MSA.fasta.noGaps.html2015-04-21 10:50 4.2KFull MSA before JPred filters in FASTA
[TXT]jp_53DqY25.full_MSA.fasta.withGaps.html2015-04-21 10:50 5.4KFull MSA before JPred filters in FASTA
[ ]jp_53DqY25.hmm2015-04-21 10:50 6.6KHHMer2 profile of the alignment
[TXT]jp_53DqY25.html2015-04-21 10:50 7.0KHTML prediction and alignment data
[ ]jp_53DqY25.input2015-04-21 10:39 42 Raw input data for analysis
[ ]jp_53DqY25.jalview2015-04-21 10:50 1.5KJalview annotation file for alignment
[ ]jp_53DqY25.jnet2015-04-21 10:50 1.4KJnet secondary structure output
[TXT]jp_53DqY25.profile2015-04-21 10:48 6.1KPSIBLAST profile from alignment
[ ]jp_53DqY25.pssm2015-04-21 10:50 7.5KPSIBLAST PSSM for Jnet
[TXT]jp_53DqY25.results.html2016-02-15 12:22 25KJPred results page
[TXT]jp_53DqY25.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_53DqY25.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_53DqY25.seq2015-04-21 10:39 48 Sequence data file
[TXT]jp_53DqY25.simple.html2015-04-21 10:50 1.0KBrief HTML: sequence and prediction only
[TXT]jp_53DqY25.svg.html2015-04-21 10:51 17KJalview SVG summary of results
[ ]jp_53DqY25.tar.gz2015-04-21 10:51 25KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.