JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-21 10:51 4.7KJPred server log file
[TXT]README2016-02-15 12:22 2.1KResults file descriptions
[TXT]e1n13_________1A.name2015-04-21 10:39 0 Job name flag file
[ ]jp_chePYfM.align2015-04-21 10:51 6.9KPSIBLAST alignment in FASTA format
[TXT]jp_chePYfM.als2015-04-21 10:51 1.6KAlscript command file for PS/PDF output
[ ]jp_chePYfM.blast.gz2015-04-21 10:51 12KCompressed PSIBLAST output file
[TXT]jp_chePYfM.coils.csv2015-04-21 10:51 306 COILS output in CSV format
[ ]jp_chePYfM.coilseq.lupas_142015-04-21 10:51 1.9KCOILS output, window length 14
[ ]jp_chePYfM.coilseq.lupas_212015-04-21 10:51 1.9KCOILS output, window length 21
[ ]jp_chePYfM.coilseq.lupas_282015-04-21 10:51 1.9KCOILS output, window length 28
[ ]jp_chePYfM.concise2015-04-21 10:51 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_chePYfM.concise.blc2015-04-21 10:51 7.5KBLC format prediction and alignment data
[ ]jp_chePYfM.concise.fasta2015-04-21 10:51 7.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_chePYfM.concise.pdf2015-04-21 10:51 43KPDF prediction and alignment data
[ ]jp_chePYfM.concise.ps2015-04-21 10:51 749KPrediction: coiled-coil, solvent, alignment
[ ]jp_chePYfM.fasta2015-04-21 10:39 59 Input query sequence in FASTA format
[ ]jp_chePYfM.full_MSA.fasta2015-04-21 10:51 16KFull MSA before JPred filters in FASTA
[TXT]jp_chePYfM.full_MSA.fasta.noGaps.html2015-04-21 10:51 40KFull MSA before JPred filters in FASTA
[TXT]jp_chePYfM.full_MSA.fasta.withGaps.html2015-04-21 10:51 63KFull MSA before JPred filters in FASTA
[ ]jp_chePYfM.hmm2015-04-21 10:51 8.6KHHMer2 profile of the alignment
[TXT]jp_chePYfM.html2015-04-21 10:51 34KHTML prediction and alignment data
[ ]jp_chePYfM.input2015-04-21 10:39 53 Raw input data for analysis
[ ]jp_chePYfM.jalview2015-04-21 10:51 1.7KJalview annotation file for alignment
[ ]jp_chePYfM.jnet2015-04-21 10:51 1.8KJnet secondary structure output
[TXT]jp_chePYfM.profile2015-04-21 10:48 7.8KPSIBLAST profile from alignment
[ ]jp_chePYfM.pssm2015-04-21 10:51 9.9KPSIBLAST PSSM for Jnet
[TXT]jp_chePYfM.results.html2016-02-15 12:22 29KJPred results page
[TXT]jp_chePYfM.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_chePYfM.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_chePYfM.seq2015-04-21 10:39 59 Sequence data file
[TXT]jp_chePYfM.simple.html2015-04-21 10:51 1.0KBrief HTML: sequence and prediction only
[TXT]jp_chePYfM.svg.html2015-04-21 10:51 21KJalview SVG summary of results
[ ]jp_chePYfM.tar.gz2015-04-21 10:51 95KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.