JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-21 10:41 4.7KJPred server log file
[TXT]README2016-02-15 12:22 2.1KResults file descriptions
[TXT]e1n13_________1B.name2015-04-21 10:39 0 Job name flag file
[ ]jp_laRWy1h.align2015-04-21 10:41 24KPSIBLAST alignment in FASTA format
[TXT]jp_laRWy1h.als2015-04-21 10:41 2.4KAlscript command file for PS/PDF output
[ ]jp_laRWy1h.blast.gz2015-04-21 10:41 58KCompressed PSIBLAST output file
[TXT]jp_laRWy1h.coils.csv2015-04-21 10:41 702 COILS output in CSV format
[ ]jp_laRWy1h.coilseq.lupas_142015-04-21 10:41 4.7KCOILS output, window length 14
[ ]jp_laRWy1h.coilseq.lupas_212015-04-21 10:41 4.7KCOILS output, window length 21
[ ]jp_laRWy1h.coilseq.lupas_282015-04-21 10:41 4.7KCOILS output, window length 28
[ ]jp_laRWy1h.concise2015-04-21 10:41 50KPrediction: coiled-coil, solvent, alignment
[ ]jp_laRWy1h.concise.blc2015-04-21 10:41 25KBLC format prediction and alignment data
[ ]jp_laRWy1h.concise.fasta2015-04-21 10:41 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_laRWy1h.concise.pdf2015-04-21 10:41 162KPDF prediction and alignment data
[ ]jp_laRWy1h.concise.ps2015-04-21 10:41 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_laRWy1h.fasta2015-04-21 10:39 126 Input query sequence in FASTA format
[ ]jp_laRWy1h.full_MSA.fasta2015-04-21 10:41 123KFull MSA before JPred filters in FASTA
[TXT]jp_laRWy1h.full_MSA.fasta.noGaps.html2015-04-21 10:41 56KFull MSA before JPred filters in FASTA
[TXT]jp_laRWy1h.full_MSA.fasta.withGaps.html2015-04-21 10:41 464KFull MSA before JPred filters in FASTA
[ ]jp_laRWy1h.hmm2015-04-21 10:41 21KHHMer2 profile of the alignment
[TXT]jp_laRWy1h.html2015-04-21 10:41 72KHTML prediction and alignment data
[ ]jp_laRWy1h.input2015-04-21 10:39 119 Raw input data for analysis
[ ]jp_laRWy1h.jalview2015-04-21 10:41 3.1KJalview annotation file for alignment
[ ]jp_laRWy1h.jnet2015-04-21 10:41 4.2KJnet secondary structure output
[TXT]jp_laRWy1h.profile2015-04-21 10:41 18KPSIBLAST profile from alignment
[ ]jp_laRWy1h.pssm2015-04-21 10:41 24KPSIBLAST PSSM for Jnet
[TXT]jp_laRWy1h.results.html2016-02-15 12:22 55KJPred results page
[TXT]jp_laRWy1h.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_laRWy1h.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_laRWy1h.seq2015-04-21 10:39 126 Sequence data file
[TXT]jp_laRWy1h.simple.html2015-04-21 10:41 1.3KBrief HTML: sequence and prediction only
[TXT]jp_laRWy1h.svg.html2015-04-21 10:41 46KJalview SVG summary of results
[ ]jp_laRWy1h.tar.gz2015-04-21 10:41 336KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.