JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:55 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1dj8a_.name2015-04-17 17:46 0 Job name flag file
[ ]jp_NigWt2f.align2015-04-17 19:54 5.6KPSIBLAST alignment in FASTA format
[TXT]jp_NigWt2f.als2015-04-17 19:54 1.9KAlscript command file for PS/PDF output
[ ]jp_NigWt2f.blast.gz2015-04-17 19:54 10KCompressed PSIBLAST output file
[TXT]jp_NigWt2f.coils.csv2015-04-17 19:54 504 COILS output in CSV format
[ ]jp_NigWt2f.coilseq.lupas_142015-04-17 19:54 3.3KCOILS output, window length 14
[ ]jp_NigWt2f.coilseq.lupas_212015-04-17 19:54 3.3KCOILS output, window length 21
[ ]jp_NigWt2f.coilseq.lupas_282015-04-17 19:54 3.3KCOILS output, window length 28
[ ]jp_NigWt2f.concise2015-04-17 19:54 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_NigWt2f.concise.blc2015-04-17 19:54 6.8KBLC format prediction and alignment data
[ ]jp_NigWt2f.concise.fasta2015-04-17 19:54 6.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_NigWt2f.concise.pdf2015-04-17 19:54 43KPDF prediction and alignment data
[ ]jp_NigWt2f.concise.ps2015-04-17 19:54 752KPrediction: coiled-coil, solvent, alignment
[ ]jp_NigWt2f.fasta2015-04-17 19:11 93 Input query sequence in FASTA format
[ ]jp_NigWt2f.full_MSA.fasta2015-04-17 19:54 8.8KFull MSA before JPred filters in FASTA
[TXT]jp_NigWt2f.full_MSA.fasta.noGaps.html2015-04-17 19:54 17KFull MSA before JPred filters in FASTA
[TXT]jp_NigWt2f.full_MSA.fasta.withGaps.html2015-04-17 19:54 33KFull MSA before JPred filters in FASTA
[ ]jp_NigWt2f.hmm2015-04-17 19:54 15KHHMer2 profile of the alignment
[TXT]jp_NigWt2f.html2015-04-17 19:54 26KHTML prediction and alignment data
[ ]jp_NigWt2f.input2015-04-17 17:46 86 Raw input data for analysis
[ ]jp_NigWt2f.jalview2015-04-17 19:54 2.4KJalview annotation file for alignment
[ ]jp_NigWt2f.jnet2015-04-17 19:54 3.0KJnet secondary structure output
[TXT]jp_NigWt2f.profile2015-04-17 19:43 13KPSIBLAST profile from alignment
[ ]jp_NigWt2f.pssm2015-04-17 19:54 17KPSIBLAST PSSM for Jnet
[TXT]jp_NigWt2f.results.html2016-02-15 12:16 42KJPred results page
[TXT]jp_NigWt2f.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_NigWt2f.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_NigWt2f.seq2015-04-17 17:46 93 Sequence data file
[TXT]jp_NigWt2f.simple.html2015-04-17 19:54 1.1KBrief HTML: sequence and prediction only
[TXT]jp_NigWt2f.svg.html2015-04-17 19:55 34KJalview SVG summary of results
[ ]jp_NigWt2f.tar.gz2015-04-17 19:55 92KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.