JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_z4cjeTi.input2015-04-17 17:11 185 Raw input data for analysis
[ ]jp_z4cjeTi.seq2015-04-17 17:11 193 Sequence data file
[TXT]d1f0la3.name2015-04-17 17:11 0 Job name flag file
[ ]jp_z4cjeTi.fasta2015-04-17 18:14 193 Input query sequence in FASTA format
[TXT]jp_z4cjeTi.profile2015-04-17 18:18 29KPSIBLAST profile from alignment
[ ]jp_z4cjeTi.blast.gz2015-04-17 18:19 3.4KCompressed PSIBLAST output file
[ ]jp_z4cjeTi.full_MSA.fasta2015-04-17 18:19 2.9KFull MSA before JPred filters in FASTA
[ ]jp_z4cjeTi.align2015-04-17 18:19 1.3KPSIBLAST alignment in FASTA format
[ ]jp_z4cjeTi.pssm2015-04-17 18:19 38KPSIBLAST PSSM for Jnet
[ ]jp_z4cjeTi.hmm2015-04-17 18:19 33KHHMer2 profile of the alignment
[ ]jp_z4cjeTi.jnet2015-04-17 18:19 6.5KJnet secondary structure output
[ ]jp_z4cjeTi.coilseq.lupas_212015-04-17 18:19 7.5KCOILS output, window length 21
[ ]jp_z4cjeTi.coilseq.lupas_142015-04-17 18:19 7.5KCOILS output, window length 14
[ ]jp_z4cjeTi.coilseq.lupas_282015-04-17 18:19 7.5KCOILS output, window length 28
[TXT]jp_z4cjeTi.coils.csv2015-04-17 18:19 1.1KCOILS output in CSV format
[ ]jp_z4cjeTi.concise2015-04-17 18:19 10KPrediction: coiled-coil, solvent, alignment
[TXT]jp_z4cjeTi.html2015-04-17 18:19 20KHTML prediction and alignment data
[TXT]jp_z4cjeTi.simple.html2015-04-17 18:19 1.3KBrief HTML: sequence and prediction only
[ ]jp_z4cjeTi.jalview2015-04-17 18:19 4.4KJalview annotation file for alignment
[ ]jp_z4cjeTi.concise.fasta2015-04-17 18:19 3.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_z4cjeTi.concise.blc2015-04-17 18:19 4.0KBLC format prediction and alignment data
[TXT]jp_z4cjeTi.als2015-04-17 18:19 2.2KAlscript command file for PS/PDF output
[ ]jp_z4cjeTi.concise.ps2015-04-17 18:19 460KPrediction: coiled-coil, solvent, alignment
[ ]jp_z4cjeTi.concise.pdf2015-04-17 18:19 26KPDF prediction and alignment data
[TXT]jp_z4cjeTi.full_MSA.fasta.withGaps.html2015-04-17 18:19 7.9KFull MSA before JPred filters in FASTA
[TXT]jp_z4cjeTi.full_MSA.fasta.noGaps.html2015-04-17 18:19 3.6KFull MSA before JPred filters in FASTA
[TXT]jp_z4cjeTi.svg.html2015-04-17 18:19 71KJalview SVG summary of results
[TXT]LOG2015-04-17 18:19 4.7KJPred server log file
[ ]jp_z4cjeTi.tar.gz2015-04-17 18:19 69KArchive containing complete results
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]jp_z4cjeTi.results.html2016-02-15 12:16 79KJPred results page
[TXT]jp_z4cjeTi.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_z4cjeTi.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.